Aaron Lun
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_17 |
| git_last_commit: 374eda1 |
| git_last_commit_date: 2023-06-07 02:59:19 -0400 (Wed, 07 Jun 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:35:56 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 133/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.12.1 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | TIMEOUT | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.12.1 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:basilisk.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings basilisk_1.12.1.tar.gz |
| StartedAt: 2023-10-15 23:42:50 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-16 00:22:51 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 2400.3 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: basilisk.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:basilisk.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings basilisk_1.12.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 12.2.0
GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'basilisk/DESCRIPTION' ... OK
* this is package 'basilisk' version '1.12.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'basilisk' can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See 'F:/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' call not declared from: 'reticulate'
'library' or 'require' call to 'reticulate' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 0.71 0.56 544.48
createLocalBasiliskEnv 0.07 0.03 239.20
useBasiliskEnv 0.00 0.03 8.47
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'basilisk' ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
> test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.8.13
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
intel-openmp conda-forge/win-64::intel-openmp-2023.2.0-h57928b3_50496
libblas conda-forge/win-64::libblas-3.9.0-18_win64_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-18_win64_mkl
libhwloc conda-forge/win-64::libhwloc-2.9.3-default_haede6df_1009
libiconv conda-forge/win-64::libiconv-1.17-h8ffe710_0
liblapack conda-forge/win-64::liblapack-3.9.0-18_win64_mkl
libxml2 conda-forge/win-64::libxml2-2.11.5-hc3477c8_1
mkl conda-forge/win-64::mkl-2022.1.0-h6a75c08_874
numpy conda-forge/win-64::numpy-1.24.4-py38h1d91fd2_0
pandas conda-forge/win-64::pandas-1.4.3-py38hcc40339_0
pthreads-win32 conda-forge/win-64::pthreads-win32-2.9.1-hfa6e2cd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/win-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
tbb conda-forge/win-64::tbb-2021.10.0-h91493d7_1
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h2bbff1b_2 --> conda-forge::openssl-3.1.3-hcfcfb64_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-h56e8100_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.8.13
- pytz=2022.1
The following NEW packages will be INSTALLED:
intel-openmp conda-forge/win-64::intel-openmp-2023.2.0-h57928b3_50496
libblas conda-forge/win-64::libblas-3.9.0-18_win64_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-18_win64_mkl
libhwloc conda-forge/win-64::libhwloc-2.9.3-default_haede6df_1009
libiconv conda-forge/win-64::libiconv-1.17-h8ffe710_0
liblapack conda-forge/win-64::liblapack-3.9.0-18_win64_mkl
libxml2 conda-forge/win-64::libxml2-2.11.5-hc3477c8_1
mkl conda-forge/win-64::mkl-2022.1.0-h6a75c08_874
numpy conda-forge/win-64::numpy-1.24.4-py38h1d91fd2_0
pandas conda-forge/win-64::pandas-1.4.2-py38hcc40339_2
pthreads-win32 conda-forge/win-64::pthreads-win32-2.9.1-hfa6e2cd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/win-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
tbb conda-forge/win-64::tbb-2021.10.0-h91493d7_1
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h2bbff1b_2 --> conda-forge::openssl-3.1.3-hcfcfb64_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-h56e8100_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
WARNING: There was an error checking the latest version of pip.
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
certifi conda-forge/win-64::certifi-2019.11.28-py27h8c360ce_1
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/win-64::python-2.7.15-h2880e7c_1011_cpython
python_abi conda-forge/win-64::python_abi-2.7-1_cp27m
setuptools conda-forge/win-64::setuptools-44.0.0-py27_0
vc pkgs/main/win-64::vc-9-h2eaa2aa_6
vs2008_runtime conda-forge/win-64::vs2008_runtime-9.0.30729.6161-0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
wincertstore conda-forge/noarch::wincertstore-0.2-pyhd8ed1ab_1009
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=2.7
The following packages will be UPDATED:
certifi conda-forge/win-64::certifi-2019.11.2~ --> pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.8.13
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h2bbff1b_2 --> conda-forge::openssl-3.1.3-hcfcfb64_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-h56e8100_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting pandas==1.4.2
Downloading pandas-1.4.2-cp38-cp38-win_amd64.whl (10.6 MB)
--------------------------------------- 10.6/10.6 MB 59.8 MB/s eta 0:00:00
Requirement already satisfied: python-dateutil>=2.8.1 in f:\biocbuild\bbs-3.17-bioc\meat\basilisk.rcheck\tests\testthat\install-test-client\thingo\lib\site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in f:\biocbuild\bbs-3.17-bioc\meat\basilisk.rcheck\tests\testthat\install-test-client\thingo\lib\site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.18.5 (from pandas==1.4.2)
Downloading numpy-1.24.4-cp38-cp38-win_amd64.whl.metadata (5.6 kB)
Requirement already satisfied: six>=1.5 in f:\biocbuild\bbs-3.17-bioc\meat\basilisk.rcheck\tests\testthat\install-test-client\thingo\lib\site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Downloading numpy-1.24.4-cp38-cp38-win_amd64.whl (14.9 MB)
---------------------------------------- 14.9/14.9 MB 65.6 MB/s eta 0:00:00
Installing collected packages: numpy, pandas
WARNING: The script f2py.exe is installed in 'F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed numpy-1.24.4 pandas-1.4.2
WARNING: There was an error checking the latest version of pip.
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h2bbff1b_2 --> conda-forge::openssl-3.1.3-hcfcfb64_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-h56e8100_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Processing f:\biocbuild\bbs-3.17-bioc\r\library\basilisk\example\inst\test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test-dummy
Building wheel for test-dummy (setup.py): started
Building wheel for test-dummy (setup.py): finished with status 'done'
Created wheel for test-dummy: filename=test_dummy-0.1-py3-none-any.whl size=1286 sha256=2fa3efa4baa4269da6f31140c3ffbfc794eb36e4dacde97788bb7c0c47002161
Stored in directory: F:\biocbuild\bbs-3.17-bioc\tmpdir\pip-ephem-wheel-cache-6m1pi1n6\wheels\e4\9a\43\e38cf6ac3f5a8f5df67c16245a3d08fc03f56ec0c84db61de0
Successfully built test-dummy
Installing collected packages: test-dummy
Successfully installed test-dummy-0.1
WARNING: There was an error checking the latest version of pip.
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1
Current channels:
- https://conda.anaconda.org/conda-forge/win-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/win-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/win-64
- https://repo.anaconda.com/pkgs/r/noarch
- https://repo.anaconda.com/pkgs/msys2/win-64
- https://repo.anaconda.com/pkgs/msys2/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\locality\1.12.1
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\locality\1.12.1
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\locality\1.12.1
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.8.13
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
intel-openmp conda-forge/win-64::intel-openmp-2023.2.0-h57928b3_50496
libblas conda-forge/win-64::libblas-3.9.0-18_win64_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-18_win64_mkl
libhwloc conda-forge/win-64::libhwloc-2.9.3-default_haede6df_1009
libiconv conda-forge/win-64::libiconv-1.17-h8ffe710_0
liblapack conda-forge/win-64::liblapack-3.9.0-18_win64_mkl
libxml2 conda-forge/win-64::libxml2-2.11.5-hc3477c8_1
mkl conda-forge/win-64::mkl-2022.1.0-h6a75c08_874
numpy conda-forge/win-64::numpy-1.24.4-py38h1d91fd2_0
pandas conda-forge/win-64::pandas-1.4.3-py38hcc40339_0
pthreads-win32 conda-forge/win-64::pthreads-win32-2.9.1-hfa6e2cd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/win-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
tbb conda-forge/win-64::tbb-2021.10.0-h91493d7_1
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h2bbff1b_2 --> conda-forge::openssl-3.1.3-hcfcfb64_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-h56e8100_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_A
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_A
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_A
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.8.13
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
intel-openmp conda-forge/win-64::intel-openmp-2023.2.0-h57928b3_50496
libblas conda-forge/win-64::libblas-3.9.0-18_win64_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-18_win64_mkl
libhwloc conda-forge/win-64::libhwloc-2.9.3-default_haede6df_1009
libiconv conda-forge/win-64::libiconv-1.17-h8ffe710_0
liblapack conda-forge/win-64::liblapack-3.9.0-18_win64_mkl
libxml2 conda-forge/win-64::libxml2-2.11.5-hc3477c8_1
mkl conda-forge/win-64::mkl-2022.1.0-h6a75c08_874
numpy conda-forge/win-64::numpy-1.24.4-py38h1d91fd2_0
pandas conda-forge/win-64::pandas-1.4.3-py38hcc40339_0
pthreads-win32 conda-forge/win-64::pthreads-win32-2.9.1-hfa6e2cd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/win-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
tbb conda-forge/win-64::tbb-2021.10.0-h91493d7_1
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h2bbff1b_2 --> conda-forge::openssl-3.1.3-hcfcfb64_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-h56e8100_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_B
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
bzip2 conda-forge/win-64::bzip2-1.0.8-h8ffe710_4
ca-certificates conda-forge/win-64::ca-certificates-2023.7.22-h56e8100_0
libffi conda-forge/win-64::libffi-3.4.2-h8ffe710_5
libsqlite conda-forge/win-64::libsqlite-3.43.2-hcfcfb64_0
libzlib conda-forge/win-64::libzlib-1.2.13-hcfcfb64_5
openssl conda-forge/win-64::openssl-3.1.3-hcfcfb64_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.43.2-hcfcfb64_0
tk conda-forge/win-64::tk-8.6.13-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-h64f974e_17
vc14_runtime conda-forge/win-64::vc14_runtime-14.36.32532-hdcecf7f_17
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.36.32532-h05e6639_17
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/win-64::xz-5.2.6-h8d14728_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_B
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-haa95532_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hcfcfb64_0 --> pkgs/main::openssl-3.0.11-h2bbff1b_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: F:\biocbuild\bbs-3.17-bioc\meat\basilisk.Rcheck\tests\testthat\install-test-client\my_package_B
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.8.13
- pytz=2022.1
The following NEW packages will be INSTALLED:
intel-openmp conda-forge/win-64::intel-openmp-2023.2.0-h57928b3_50496
libblas conda-forge/win-64::libblas-3.9.0-18_win64_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-18_win64_mkl
libhwloc conda-forge/win-64::libhwloc-2.9.3-default_haede6df_1009
libiconv conda-forge/win-64::libiconv-1.17-h8ffe710_0
liblapack conda-forge/win-64::liblapack-3.9.0-18_win64_mkl
libxml2 conda-forge/win-64::libxml2-2.11.5-hc3477c8_1
mkl conda-forge/win-64::mkl-2022.1.0-h6a75c08_874
numpy conda-forge/win-64::numpy-1.24.4-py38h1d91fd2_0
pandas conda-forge/win-64::pandas-1.4.2-py38hcc40339_2
pthreads-win32 conda-forge/win-64::pthreads-win32-2.9.1-hfa6e2cd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/win-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
tbb conda-forge/win-64::tbb-2021.10.0-h91493d7_1
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h2bbff1b_2 --> conda-forge::openssl-3.1.3-hcfcfb64_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-h56e8100_0
Preparing transaction: ...working... done
Verifying transaction: ...working...
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.02 | 0.00 | 0.01 | |
| PyPiLink | 0 | 0 | 0 | |
| basiliskOptions | 0 | 0 | 0 | |
| basiliskStart | 0.71 | 0.56 | 544.48 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 0.07 | 0.03 | 239.20 | |
| listPackages | 0.00 | 0.00 | 4.35 | |
| obtainEnvironmentPath | 0 | 0 | 0 | |
| setupBasiliskEnv | 0.01 | 0.00 | 0.01 | |
| useBasiliskEnv | 0.00 | 0.03 | 8.47 | |