Aaron Lun
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_17 |
| git_last_commit: 374eda1 |
| git_last_commit_date: 2023-06-07 02:59:19 -0400 (Wed, 07 Jun 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:35:12 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 133/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.12.1 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | TIMEOUT | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.12.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings basilisk_1.12.1.tar.gz |
| StartedAt: 2023-10-15 19:24:05 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 19:53:40 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 1774.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: basilisk.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings basilisk_1.12.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.12.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' call not declared from: ‘reticulate’
'library' or 'require' call to ‘reticulate’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 271.514 33.916 310.831
createLocalBasiliskEnv 89.954 10.392 103.727
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘motivation.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
> test_check("basilisk")
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.8.13
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-18_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-18_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_2
libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-ha4646dd_2
liblapack conda-forge/linux-64::liblapack-3.9.0-18_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.24-pthreads_h413a1c8_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
numpy conda-forge/linux-64::numpy-1.24.4-py38h59b608b_0
pandas conda-forge/linux-64::pandas-1.4.3-py38h47df419_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.8.13
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-18_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-18_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_2
libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-ha4646dd_2
liblapack conda-forge/linux-64::liblapack-3.9.0-18_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.24-pthreads_h413a1c8_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
numpy conda-forge/linux-64::numpy-1.24.4-py38h59b608b_0
pandas conda-forge/linux-64::pandas-1.4.2-py38h47df419_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/linux-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
WARNING: There was an error checking the latest version of pip.
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
certifi conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython
python_abi conda-forge/linux-64::python_abi-2.7-1_cp27mu
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/linux-64::setuptools-44.0.0-py27_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
zlib conda-forge/linux-64::zlib-1.2.13-hd590300_5
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
certifi conda-forge/linux-64::certifi-2019.11~ --> pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
openssl conda-forge::openssl-1.1.1w-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
python conda-forge::python-2.7.15-h5a48372_1~ --> pkgs/main::python-2.7.18-h02575d3_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python[version='2.7.*,2.7.*']
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
certifi pkgs/main/noarch::certifi-2020.6.20-p~ --> conda-forge/linux-64::certifi-2016.9.26-py27_0
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-1.1.1w-hd590300_0
python pkgs/main::python-2.7.18-h02575d3_0 --> conda-forge::python-2.7.15-h5a48372_1011_cpython
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.8.13
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting pandas==1.4.2
Downloading pandas-1.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.7/11.7 MB 16.8 MB/s eta 0:00:00
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.8/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.8/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.18.5 (from pandas==1.4.2)
Downloading numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.8/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Downloading numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.3/17.3 MB 16.6 MB/s eta 0:00:00
Installing collected packages: numpy, pandas
Successfully installed numpy-1.24.4 pandas-1.4.2
WARNING: There was an error checking the latest version of pip.
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Processing /home/biocbuild/bbs-3.17-bioc/R/site-library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test-dummy
Building wheel for test-dummy (setup.py): started
Building wheel for test-dummy (setup.py): finished with status 'done'
Created wheel for test-dummy: filename=test_dummy-0.1-py3-none-any.whl size=1279 sha256=a8fe58b065e437802fe4132cd31b68205d0e2d9d764715284b85bfe7326a9500
Stored in directory: /tmp/pip-ephem-wheel-cache-rfohfa6l/wheels/b1/fd/98/45662bcba3bac88ba5da2734a21541ef2739caf3b5127ba5aa
Successfully built test-dummy
Installing collected packages: test-dummy
Successfully installed test-dummy-0.1
WARNING: There was an error checking the latest version of pip.
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1
Current channels:
- https://conda.anaconda.org/conda-forge/linux-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/linux-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/linux-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-py38_4.12.0-Linux-x86_64.sh'
Content type 'application/x-sh' length 76120962 bytes (72.6 MB)
==================================================
downloaded 72.6 MB
PREFIX=/tmp/Rtmpct80nc/file3527943a89527a/1.12.1/0
Unpacking payload ...
0%| | 0/39 [00:00<?, ?it/s]
Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda: 0%| | 0/39 [00:00<?, ?it/s]
Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda: 3%|▎ | 1/39 [00:00<00:05, 6.37it/s]
Extracting : certifi-2021.10.8-py38h06a4308_2.conda: 3%|▎ | 1/39 [00:00<00:05, 6.37it/s]
Extracting : pysocks-1.7.1-py38h06a4308_0.conda: 5%|▌ | 2/39 [00:00<00:05, 6.37it/s]
Extracting : libffi-3.3-he6710b0_2.conda: 8%|▊ | 3/39 [00:00<00:05, 6.37it/s]
Extracting : pycparser-2.21-pyhd3eb1b0_0.conda: 10%|█ | 4/39 [00:00<00:05, 6.37it/s]
Extracting : libstdcxx-ng-9.3.0-hd4cf53a_17.conda: 13%|█▎ | 5/39 [00:00<00:05, 6.37it/s]
Extracting : ruamel_yaml-0.15.100-py38h27cfd23_0.conda: 15%|█▌ | 6/39 [00:00<00:05, 6.37it/s]
Extracting : ld_impl_linux-64-2.35.1-h7274673_9.conda: 18%|█▊ | 7/39 [00:00<00:05, 6.37it/s]
Extracting : idna-3.3-pyhd3eb1b0_0.conda: 21%|██ | 8/39 [00:00<00:04, 6.37it/s]
Extracting : tk-8.6.11-h1ccaba5_0.conda: 23%|██▎ | 9/39 [00:00<00:04, 6.37it/s]
Extracting : tk-8.6.11-h1ccaba5_0.conda: 26%|██▌ | 10/39 [00:00<00:00, 39.43it/s]
Extracting : cffi-1.15.0-py38hd667e15_1.conda: 26%|██▌ | 10/39 [00:00<00:00, 39.43it/s]
Extracting : colorama-0.4.4-pyhd3eb1b0_0.conda: 28%|██▊ | 11/39 [00:00<00:00, 39.43it/s]
Extracting : pyopenssl-22.0.0-pyhd3eb1b0_0.conda: 31%|███ | 12/39 [00:00<00:00, 39.43it/s]
Extracting : wheel-0.37.1-pyhd3eb1b0_0.conda: 33%|███▎ | 13/39 [00:00<00:00, 39.43it/s]
Extracting : ncurses-6.3-h7f8727e_2.conda: 36%|███▌ | 14/39 [00:00<00:00, 39.43it/s]
Extracting : requests-2.27.1-pyhd3eb1b0_0.conda: 38%|███▊ | 15/39 [00:00<00:00, 39.43it/s]
Extracting : conda-content-trust-0.1.1-pyhd3eb1b0_0.conda: 41%|████ | 16/39 [00:00<00:00, 39.43it/s]
Extracting : libgomp-9.3.0-h5101ec6_17.conda: 44%|████▎ | 17/39 [00:00<00:00, 39.43it/s]
Extracting : ca-certificates-2022.3.29-h06a4308_1.conda: 46%|████▌ | 18/39 [00:00<00:00, 39.43it/s]
Extracting : tqdm-4.63.0-pyhd3eb1b0_0.conda: 49%|████▊ | 19/39 [00:00<00:00, 39.43it/s]
Extracting : pip-21.2.4-py38h06a4308_0.conda: 51%|█████▏ | 20/39 [00:00<00:00, 39.43it/s]
Extracting : cryptography-36.0.0-py38h9ce1e76_0.conda: 54%|█████▍ | 21/39 [00:00<00:00, 39.43it/s]
Extracting : openssl-1.1.1n-h7f8727e_0.conda: 56%|█████▋ | 22/39 [00:00<00:00, 39.43it/s]
Extracting : conda-4.12.0-py38h06a4308_0.conda: 59%|█████▉ | 23/39 [00:00<00:00, 39.43it/s]
Extracting : conda-4.12.0-py38h06a4308_0.conda: 62%|██████▏ | 24/39 [00:00<00:00, 52.61it/s]
Extracting : pycosat-0.6.3-py38h7b6447c_1.conda: 62%|██████▏ | 24/39 [00:00<00:00, 52.61it/s]
Extracting : readline-8.1.2-h7f8727e_1.conda: 64%|██████▍ | 25/39 [00:00<00:00, 52.61it/s]
Extracting : xz-5.2.5-h7b6447c_0.conda: 67%|██████▋ | 26/39 [00:00<00:00, 52.61it/s]
Extracting : brotlipy-0.7.0-py38h27cfd23_1003.conda: 69%|██████▉ | 27/39 [00:00<00:00, 52.61it/s]
Extracting : _libgcc_mutex-0.1-main.conda: 72%|███████▏ | 28/39 [00:00<00:00, 52.61it/s]
Extracting : setuptools-61.2.0-py38h06a4308_0.conda: 74%|███████▍ | 29/39 [00:00<00:00, 52.61it/s]
Extracting : zlib-1.2.12-h7f8727e_1.conda: 77%|███████▋ | 30/39 [00:00<00:00, 52.61it/s]
Extracting : sqlite-3.38.2-hc218d9a_0.conda: 79%|███████▉ | 31/39 [00:00<00:00, 52.61it/s]
Extracting : yaml-0.2.5-h7b6447c_0.conda: 82%|████████▏ | 32/39 [00:00<00:00, 52.61it/s]
Extracting : python-3.8.13-h12debd9_0.conda: 85%|████████▍ | 33/39 [00:00<00:00, 52.61it/s]
Extracting : python-3.8.13-h12debd9_0.conda: 87%|████████▋ | 34/39 [00:00<00:00, 49.48it/s]
Extracting : libgcc-ng-9.3.0-h5101ec6_17.conda: 87%|████████▋ | 34/39 [00:00<00:00, 49.48it/s]
Extracting : conda-package-handling-1.8.1-py38h7f8727e_0.conda: 90%|████████▉ | 35/39 [00:00<00:00, 49.48it/s]
Extracting : urllib3-1.26.8-pyhd3eb1b0_0.conda: 92%|█████████▏| 36/39 [00:00<00:00, 49.48it/s]
Extracting : six-1.16.0-pyhd3eb1b0_1.conda: 95%|█████████▍| 37/39 [00:00<00:00, 49.48it/s]
Extracting : _openmp_mutex-4.5-1_gnu.tar.bz2: 97%|█████████▋| 38/39 [00:00<00:00, 49.48it/s]
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmpct80nc/file3527943a89527a/1.12.1/0
added / updated specs:
- _libgcc_mutex==0.1=main
- _openmp_mutex==4.5=1_gnu
- brotlipy==0.7.0=py38h27cfd23_1003
- ca-certificates==2022.3.29=h06a4308_1
- certifi==2021.10.8=py38h06a4308_2
- cffi==1.15.0=py38hd667e15_1
- charset-normalizer==2.0.4=pyhd3eb1b0_0
- colorama==0.4.4=pyhd3eb1b0_0
- conda-content-trust==0.1.1=pyhd3eb1b0_0
- conda-package-handling==1.8.1=py38h7f8727e_0
- conda==4.12.0=py38h06a4308_0
- cryptography==36.0.0=py38h9ce1e76_0
- idna==3.3=pyhd3eb1b0_0
- ld_impl_linux-64==2.35.1=h7274673_9
- libffi==3.3=he6710b0_2
- libgcc-ng==9.3.0=h5101ec6_17
- libgomp==9.3.0=h5101ec6_17
- libstdcxx-ng==9.3.0=hd4cf53a_17
- ncurses==6.3=h7f8727e_2
- openssl==1.1.1n=h7f8727e_0
- pip==21.2.4=py38h06a4308_0
- pycosat==0.6.3=py38h7b6447c_1
- pycparser==2.21=pyhd3eb1b0_0
- pyopenssl==22.0.0=pyhd3eb1b0_0
- pysocks==1.7.1=py38h06a4308_0
- python==3.8.13=h12debd9_0
- readline==8.1.2=h7f8727e_1
- requests==2.27.1=pyhd3eb1b0_0
- ruamel_yaml==0.15.100=py38h27cfd23_0
- setuptools==61.2.0=py38h06a4308_0
- six==1.16.0=pyhd3eb1b0_1
- sqlite==3.38.2=hc218d9a_0
- tk==8.6.11=h1ccaba5_0
- tqdm==4.63.0=pyhd3eb1b0_0
- urllib3==1.26.8=pyhd3eb1b0_0
- wheel==0.37.1=pyhd3eb1b0_0
- xz==5.2.5=h7b6447c_0
- yaml==0.2.5=h7b6447c_0
- zlib==1.2.12=h7f8727e_1
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
_openmp_mutex pkgs/main/linux-64::_openmp_mutex-4.5-1_gnu
brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py38h27cfd23_1003
ca-certificates pkgs/main/linux-64::ca-certificates-2022.3.29-h06a4308_1
certifi pkgs/main/linux-64::certifi-2021.10.8-py38h06a4308_2
cffi pkgs/main/linux-64::cffi-1.15.0-py38hd667e15_1
charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
colorama pkgs/main/noarch::colorama-0.4.4-pyhd3eb1b0_0
conda pkgs/main/linux-64::conda-4.12.0-py38h06a4308_0
conda-content-tru~ pkgs/main/noarch::conda-content-trust-0.1.1-pyhd3eb1b0_0
conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.8.1-py38h7f8727e_0
cryptography pkgs/main/linux-64::cryptography-36.0.0-py38h9ce1e76_0
idna pkgs/main/noarch::idna-3.3-pyhd3eb1b0_0
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.35.1-h7274673_9
libffi pkgs/main/linux-64::libffi-3.3-he6710b0_2
libgcc-ng pkgs/main/linux-64::libgcc-ng-9.3.0-h5101ec6_17
libgomp pkgs/main/linux-64::libgomp-9.3.0-h5101ec6_17
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.3.0-hd4cf53a_17
ncurses pkgs/main/linux-64::ncurses-6.3-h7f8727e_2
openssl pkgs/main/linux-64::openssl-1.1.1n-h7f8727e_0
pip pkgs/main/linux-64::pip-21.2.4-py38h06a4308_0
pycosat pkgs/main/linux-64::pycosat-0.6.3-py38h7b6447c_1
pycparser pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
pyopenssl pkgs/main/noarch::pyopenssl-22.0.0-pyhd3eb1b0_0
pysocks pkgs/main/linux-64::pysocks-1.7.1-py38h06a4308_0
python pkgs/main/linux-64::python-3.8.13-h12debd9_0
readline pkgs/main/linux-64::readline-8.1.2-h7f8727e_1
requests pkgs/main/noarch::requests-2.27.1-pyhd3eb1b0_0
ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.100-py38h27cfd23_0
setuptools pkgs/main/linux-64::setuptools-61.2.0-py38h06a4308_0
six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
sqlite pkgs/main/linux-64::sqlite-3.38.2-hc218d9a_0
tk pkgs/main/linux-64::tk-8.6.11-h1ccaba5_0
tqdm pkgs/main/noarch::tqdm-4.63.0-pyhd3eb1b0_0
urllib3 pkgs/main/noarch::urllib3-1.26.8-pyhd3eb1b0_0
wheel pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0
xz pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
zlib pkgs/main/linux-64::zlib-1.2.12-h7f8727e_1
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmpct80nc/file3527943a89527a/1.12.1/basilisk.utils/1.12.1/test
added / updated specs:
- python=3.8.13
The following packages will be downloaded:
package | build
---------------------------|-----------------
_libgcc_mutex-0.1 | conda_forge 3 KB conda-forge
_openmp_mutex-4.5 | 2_gnu 23 KB conda-forge
bzip2-1.0.8 | h7f98852_4 484 KB conda-forge
ca-certificates-2023.7.22 | hbcca054_0 146 KB conda-forge
ld_impl_linux-64-2.40 | h41732ed_0 688 KB conda-forge
libffi-3.4.2 | h7f98852_5 57 KB conda-forge
libgcc-ng-13.2.0 | h807b86a_2 753 KB conda-forge
libgomp-13.2.0 | h807b86a_2 411 KB conda-forge
libnsl-2.0.1 | hd590300_0 33 KB conda-forge
libsqlite-3.43.2 | h2797004_0 820 KB conda-forge
libuuid-2.38.1 | h0b41bf4_0 33 KB conda-forge
libzlib-1.2.13 | hd590300_5 60 KB conda-forge
ncurses-6.4 | hcb278e6_0 860 KB conda-forge
openssl-3.1.3 | hd590300_0 2.5 MB conda-forge
pip-23.3 | pyhd8ed1ab_0 1.3 MB conda-forge
python-3.8.13 |ha86cf86_0_cpython 25.2 MB conda-forge
readline-8.2 | h8228510_1 275 KB conda-forge
setuptools-68.2.2 | pyhd8ed1ab_0 454 KB conda-forge
sqlite-3.43.2 | h2c6b66d_0 812 KB conda-forge
tk-8.6.13 | h2797004_0 3.1 MB conda-forge
wheel-0.41.2 | pyhd8ed1ab_0 56 KB conda-forge
xz-5.2.6 | h166bdaf_0 409 KB conda-forge
------------------------------------------------------------
Total: 38.4 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmpct80nc/file3527943a89527a/1.12.1/basilisk.utils/1.12.1/test
added / updated specs:
- python=3.8.13
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2023.08.22 | h06a4308_0 123 KB
openssl-3.0.11 | h7f8727e_2 5.2 MB
------------------------------------------------------------
Total: 5.3 MB
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Downloading and Extracting Packages
ca-certificates-2023 | 123 KB | | 0%
ca-certificates-2023 | 123 KB | ########## | 100%
ca-certificates-2023 | 123 KB | ########## | 100%
openssl-3.0.11 | 5.2 MB | | 0%
openssl-3.0.11 | 5.2 MB | ######3 | 64%
openssl-3.0.11 | 5.2 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmpct80nc/file3527943a89527a/1.12.1/basilisk.utils/1.12.1/test
added / updated specs:
- pandas=1.4.3
- python=3.8.13
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |18_linux64_openblas 14 KB conda-forge
libcblas-3.9.0 |18_linux64_openblas 14 KB conda-forge
libgfortran-ng-13.2.0 | h69a702a_2 23 KB conda-forge
libgfortran5-13.2.0 | ha4646dd_2 1.4 MB conda-forge
liblapack-3.9.0 |18_linux64_openblas 14 KB conda-forge
libopenblas-0.3.24 |pthreads_h413a1c8_0 5.2 MB conda-forge
libstdcxx-ng-13.2.0 | h7e041cc_2 3.7 MB conda-forge
numpy-1.24.4 | py38h59b608b_0 6.4 MB conda-forge
pandas-1.4.3 | py38h47df419_0 12.7 MB conda-forge
python-dateutil-2.8.2 | pyhd8ed1ab_0 240 KB conda-forge
python_abi-3.8 | 4_cp38 6 KB conda-forge
pytz-2023.3.post1 | pyhd8ed1ab_0 183 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
------------------------------------------------------------
Total: 29.8 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-18_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-18_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_2
libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-ha4646dd_2
liblapack conda-forge/linux-64::liblapack-3.9.0-18_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.24-pthreads_h413a1c8_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
numpy conda-forge/linux-64::numpy-1.24.4-py38h59b608b_0
pandas conda-forge/linux-64::pandas-1.4.3-py38h47df419_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2023.3.post1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Downloading and Extracting Packages
python-dateutil-2.8. | 240 KB | | 0%
python-dateutil-2.8. | 240 KB | ####6 | 47%
python-dateutil-2.8. | 240 KB | ########## | 100%
pandas-1.4.3 | 12.7 MB | | 0%
pandas-1.4.3 | 12.7 MB | | 0%
pandas-1.4.3 | 12.7 MB | 9 | 9%
pandas-1.4.3 | 12.7 MB | ####6 | 47%
pandas-1.4.3 | 12.7 MB | ########3 | 84%
pandas-1.4.3 | 12.7 MB | ########## | 100%
python_abi-3.8 | 6 KB | | 0%
python_abi-3.8 | 6 KB | ########## | 100%
python_abi-3.8 | 6 KB | ########## | 100%
pytz-2023.3.post1 | 183 KB | | 0%
pytz-2023.3.post1 | 183 KB | ########## | 100%
pytz-2023.3.post1 | 183 KB | ########## | 100%
numpy-1.24.4 | 6.4 MB | | 0%
numpy-1.24.4 | 6.4 MB | ####8 | 48%
numpy-1.24.4 | 6.4 MB | ########## | 100%
numpy-1.24.4 | 6.4 MB | ########## | 100%
libblas-3.9.0 | 14 KB | | 0%
libblas-3.9.0 | 14 KB | ########## | 100%
libblas-3.9.0 | 14 KB | ########## | 100%
liblapack-3.9.0 | 14 KB | | 0%
liblapack-3.9.0 | 14 KB | ########## | 100%
liblapack-3.9.0 | 14 KB | ########## | 100%
six-1.16.0 | 14 KB | | 0%
six-1.16.0 | 14 KB | ########## | 100%
libcblas-3.9.0 | 14 KB | | 0%
libcblas-3.9.0 | 14 KB | ########## | 100%
libcblas-3.9.0 | 14 KB | ########## | 100%
libopenblas-0.3.24 | 5.2 MB | | 0%
libopenblas-0.3.24 | 5.2 MB | ######5 | 65%
libopenblas-0.3.24 | 5.2 MB | ########## | 100%
libgfortran5-13.2.0 | 1.4 MB | | 0%
libgfortran5-13.2.0 | 1.4 MB | ########## | 100%
libgfortran5-13.2.0 | 1.4 MB | ########## | 100%
libstdcxx-ng-13.2.0 | 3.7 MB | | 0%
libstdcxx-ng-13.2.0 | 3.7 MB | #########5 | 96%
libstdcxx-ng-13.2.0 | 3.7 MB | ########## | 100%
libgfortran-ng-13.2. | 23 KB | | 0%
libgfortran-ng-13.2. | 23 KB | ########## | 100%
libgfortran-ng-13.2. | 23 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.12.1
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.12.1
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.12.1
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.8.13
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-18_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-18_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_2
libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-ha4646dd_2
liblapack conda-forge/linux-64::liblapack-3.9.0-18_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.24-pthreads_h413a1c8_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
numpy conda-forge/linux-64::numpy-1.24.4-py38h59b608b_0
pandas conda-forge/linux-64::pandas-1.4.3-py38h47df419_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
WARNING: There was an error checking the latest version of pip.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.8.13
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-18_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-18_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_2
libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-ha4646dd_2
liblapack conda-forge/linux-64::liblapack-3.9.0-18_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.24-pthreads_h413a1c8_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
numpy conda-forge/linux-64::numpy-1.24.4-py38h59b608b_0
pandas conda-forge/linux-64::pandas-1.4.3-py38h47df419_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.8.13
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4
ca-certificates conda-forge/linux-64::ca-certificates-2023.7.22-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-h41732ed_0
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-13.2.0-h807b86a_2
libgomp conda-forge/linux-64::libgomp-13.2.0-h807b86a_2
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.43.2-h2797004_0
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libzlib conda-forge/linux-64::libzlib-1.2.13-hd590300_5
ncurses conda-forge/linux-64::ncurses-6.4-hcb278e6_0
openssl conda-forge/linux-64::openssl-3.1.3-hd590300_0
pip conda-forge/noarch::pip-23.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-68.2.2-pyhd8ed1ab_0
sqlite conda-forge/linux-64::sqlite-3.43.2-h2c6b66d_0
tk conda-forge/linux-64::tk-8.6.13-h2797004_0
wheel conda-forge/noarch::wheel-0.41.2-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.8.13
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2023.7.2~ --> pkgs/main::ca-certificates-2023.08.22-h06a4308_0
The following packages will be SUPERSEDED by a higher-priority channel:
openssl conda-forge::openssl-3.1.3-hd590300_0 --> pkgs/main::openssl-3.0.11-h7f8727e_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.17-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.8.13
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-18_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-18_linux64_openblas
libgfortran-ng conda-forge/linux-64::libgfortran-ng-13.2.0-h69a702a_2
libgfortran5 conda-forge/linux-64::libgfortran5-13.2.0-ha4646dd_2
liblapack conda-forge/linux-64::liblapack-3.9.0-18_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.24-pthreads_h413a1c8_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-13.2.0-h7e041cc_2
numpy conda-forge/linux-64::numpy-1.24.4-py38h59b608b_0
pandas conda-forge/linux-64::pandas-1.4.2-py38h47df419_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/linux-64::python_abi-3.8-4_cp38
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
The following packages will be UPDATED:
openssl pkgs/main::openssl-3.0.11-h7f8727e_2 --> conda-forge::openssl-3.1.3-hd590300_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2023.08.22~ --> conda-forge::ca-certificates-2023.7.22-hbcca054_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.9.0
Please update conda by running
$ conda update -n base -c defaults conda
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 63 ]
>
> proc.time()
user system elapsed
977.987 126.629 1161.399
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.003 | 0.000 | 0.004 | |
| PyPiLink | 0 | 0 | 0 | |
| basiliskOptions | 0.001 | 0.000 | 0.000 | |
| basiliskStart | 271.514 | 33.916 | 310.831 | |
| configureBasiliskEnv | 0.001 | 0.000 | 0.001 | |
| createLocalBasiliskEnv | 89.954 | 10.392 | 103.727 | |
| listPackages | 0.638 | 0.199 | 0.900 | |
| obtainEnvironmentPath | 0.004 | 0.000 | 0.004 | |
| setupBasiliskEnv | 0.002 | 0.000 | 0.002 | |
| useBasiliskEnv | 1.161 | 0.257 | 1.343 | |