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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ttgsea.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ttgsea_1.6.3.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/ttgsea.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ttgsea/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ttgsea’ version ‘1.6.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ttgsea’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
predict_model 20.126  8.460  12.349
fit_model     18.705  7.116  12.716
token_vector   9.868  1.169   5.905
text_token     9.701  1.070   5.621
bi_gru         6.500  0.955   7.525
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ttgsea
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘ttgsea’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ttgsea)

R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ttgsea)
Loading required package: keras
> 
> test_check("ttgsea")
2023-04-10 23:15:06.086008: I tensorflow/core/platform/cpu_feature_guard.cc:151] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.

 1/45 [..............................] - ETA: 2:08 - loss: 1.4058 - pearson_correlation: 0.2895
 2/45 [>.............................] - ETA: 2s - loss: 1.4437 - pearson_correlation: 0.2608  
 3/45 [=>............................] - ETA: 2s - loss: 1.4917 - pearson_correlation: 0.1482
 5/45 [==>...........................] - ETA: 1s - loss: 1.5131 - pearson_correlation: 0.1153
 7/45 [===>..........................] - ETA: 1s - loss: 1.4956 - pearson_correlation: 0.1200
 9/45 [=====>........................] - ETA: 1s - loss: 1.4738 - pearson_correlation: 0.1202
11/45 [======>.......................] - ETA: 1s - loss: 1.4989 - pearson_correlation: 0.1238
13/45 [=======>......................] - ETA: 1s - loss: 1.5132 - pearson_correlation: 0.1138
15/45 [=========>....................] - ETA: 1s - loss: 1.5431 - pearson_correlation: 0.1200
17/45 [==========>...................] - ETA: 0s - loss: 1.5276 - pearson_correlation: 0.1293
19/45 [===========>..................] - ETA: 0s - loss: 1.5580 - pearson_correlation: 0.1301
21/45 [=============>................] - ETA: 0s - loss: 1.5504 - pearson_correlation: 0.1090
23/45 [==============>...............] - ETA: 0s - loss: 1.5538 - pearson_correlation: 0.0899
25/45 [===============>..............] - ETA: 0s - loss: 1.5681 - pearson_correlation: 0.1013
27/45 [=================>............] - ETA: 0s - loss: 1.5610 - pearson_correlation: 0.0827
29/45 [==================>...........] - ETA: 0s - loss: 1.5581 - pearson_correlation: 0.1014
31/45 [===================>..........] - ETA: 0s - loss: 1.5639 - pearson_correlation: 0.1088
33/45 [=====================>........] - ETA: 0s - loss: 1.5541 - pearson_correlation: 0.1113
35/45 [======================>.......] - ETA: 0s - loss: 1.5563 - pearson_correlation: 0.0997
37/45 [=======================>......] - ETA: 0s - loss: 1.5539 - pearson_correlation: 0.1045
39/45 [=========================>....] - ETA: 0s - loss: 1.5474 - pearson_correlation: 0.1169
41/45 [==========================>...] - ETA: 0s - loss: 1.5554 - pearson_correlation: 0.1268
43/45 [===========================>..] - ETA: 0s - loss: 1.5530 - pearson_correlation: 0.1349
45/45 [==============================] - ETA: 0s - loss: 1.5553 - pearson_correlation: 0.1426
45/45 [==============================] - 4s 32ms/step - loss: 1.5553 - pearson_correlation: 0.1426
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
> 
> proc.time()
   user  system elapsed 
 25.995  11.794  21.397