Jianhong Ou
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/trackViewer |
| git_branch: RELEASE_3_16 |
| git_last_commit: 9daa482 |
| git_last_commit_date: 2022-11-01 11:09:09 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:56 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the trackViewer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trackViewer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2072/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| trackViewer 1.34.0 (landing page) Jianhong Ou
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: trackViewer |
| Version: 1.34.0 |
| Command: rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir trackViewer_1.34.0.tar.gz |
| StartedAt: 2023-04-11 08:55:22 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:56:59 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 97.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: trackViewer_1.34.0.zip |
| PackageFileSize: 6.327 MiB |
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### Running command:
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### rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir trackViewer_1.34.0.tar.gz
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* installing *source* package 'trackViewer' ...
** using staged installation
** libs
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hic.cpp -o hic.o
hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)':
hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable]
247 | long nviPosition = readLong(ifile);
| ^~~~~~~~~~~
hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable]
248 | long nviLength = readLong(ifile);
| ^~~~~~~~~
hic.cpp: In function 'std::vector<cellData> getByCoor(std::string, int, int, std::string, int, int, int, std::string, std::string, HicFileHead&, HicFileFoot&, std::ifstream&)':
hic.cpp:751:19: warning: '*((void*)(& bd)+8).resolutions::nResolutions' may be used uninitialized in this function [-Wmaybe-uninitialized]
751 | for(int i=0; i<data.nResolutions; i++){
| ~^~~~~~~~~~~~~~~~~~
hic.cpp:797:10: note: '*((void*)(& bd)+8).resolutions::nResolutions' was declared here
797 | body bd;
| ^~
hic.cpp:797:10: warning: '*((void*)(& bd)+8).resolutions::res' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -std=gnu++14 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/trackViewer.buildbin-libdir/00LOCK-trackViewer/00new/trackViewer/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.34.0.zip
* DONE (trackViewer)