Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:19 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the singleCellTK package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/singleCellTK.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1889/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
singleCellTK 2.8.0 (landing page) Yichen Wang
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | TIMEOUT | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: singleCellTK |
Version: 2.8.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings singleCellTK_2.8.0.tar.gz |
StartedAt: 2023-04-11 00:04:29 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 00:44:30 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 2401.3 seconds |
RetCode: None |
Status: TIMEOUT |
CheckDir: singleCellTK.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings singleCellTK_2.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/singleCellTK.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘singleCellTK/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘singleCellTK’ version ‘2.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘singleCellTK’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: extdata 1.6Mb shiny 2.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ...
singleCellTK.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL singleCellTK ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘singleCellTK’ ... ** using staged installation ** R ** data ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (singleCellTK)
singleCellTK.Rcheck/singleCellTK-Ex.timings
name | user | system | elapsed | |
MitoGenes | 0.004 | 0.000 | 0.003 | |
SEG | 0.003 | 0.000 | 0.003 | |
calcEffectSizes | 0.16 | 0.00 | 0.16 | |
combineSCE | 1.762 | 0.063 | 1.826 | |
computeZScore | 0.325 | 0.061 | 0.384 | |
convertSCEToSeurat | 3.724 | 0.740 | 4.464 | |
convertSeuratToSCE | 0.457 | 0.000 | 0.457 | |
dedupRowNames | 0.051 | 0.004 | 0.054 | |
detectCellOutlier | 6.294 | 0.255 | 6.550 | |
diffAbundanceFET | 0.047 | 0.004 | 0.051 | |
discreteColorPalette | 0.008 | 0.000 | 0.008 | |
distinctColors | 0.002 | 0.000 | 0.003 | |
downSampleCells | 0.697 | 0.036 | 0.733 | |
downSampleDepth | 0.574 | 0.000 | 0.574 | |
expData-ANY-character-method | 0.346 | 0.007 | 0.354 | |
expData-set-ANY-character-CharacterOrNullOrMissing-logical-method | 0.377 | 0.028 | 0.405 | |
expData-set | 0.375 | 0.000 | 0.375 | |
expData | 0.332 | 0.004 | 0.336 | |
expDataNames-ANY-method | 0.32 | 0.00 | 0.32 | |
expDataNames | 0.313 | 0.003 | 0.317 | |
expDeleteDataTag | 0.031 | 0.009 | 0.039 | |
expSetDataTag | 0.025 | 0.000 | 0.025 | |
expTaggedData | 0.026 | 0.000 | 0.026 | |
exportSCE | 0.023 | 0.000 | 0.023 | |
exportSCEtoAnnData | 0.098 | 0.000 | 0.098 | |
exportSCEtoFlatFile | 0.095 | 0.000 | 0.095 | |
featureIndex | 0.037 | 0.000 | 0.037 | |
generateSimulatedData | 0.030 | 0.015 | 0.046 | |
getBiomarker | 0.053 | 0.000 | 0.053 | |
getDEGTopTable | 0.920 | 0.028 | 0.949 | |
getDiffAbundanceResults | 0.04 | 0.00 | 0.04 | |