| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:19 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the singleCellTK package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/singleCellTK.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1889/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| singleCellTK 2.8.0 (landing page) Yichen Wang
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | TIMEOUT | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: singleCellTK |
| Version: 2.8.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings singleCellTK_2.8.0.tar.gz |
| StartedAt: 2023-04-11 00:04:29 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 00:44:30 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 2401.3 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: singleCellTK.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings singleCellTK_2.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/singleCellTK.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘singleCellTK/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘singleCellTK’ version ‘2.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘singleCellTK’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
shiny 2.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...
singleCellTK.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL singleCellTK ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘singleCellTK’ ... ** using staged installation ** R ** data ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (singleCellTK)
singleCellTK.Rcheck/singleCellTK-Ex.timings
| name | user | system | elapsed | |
| MitoGenes | 0.004 | 0.000 | 0.003 | |
| SEG | 0.003 | 0.000 | 0.003 | |
| calcEffectSizes | 0.16 | 0.00 | 0.16 | |
| combineSCE | 1.762 | 0.063 | 1.826 | |
| computeZScore | 0.325 | 0.061 | 0.384 | |
| convertSCEToSeurat | 3.724 | 0.740 | 4.464 | |
| convertSeuratToSCE | 0.457 | 0.000 | 0.457 | |
| dedupRowNames | 0.051 | 0.004 | 0.054 | |
| detectCellOutlier | 6.294 | 0.255 | 6.550 | |
| diffAbundanceFET | 0.047 | 0.004 | 0.051 | |
| discreteColorPalette | 0.008 | 0.000 | 0.008 | |
| distinctColors | 0.002 | 0.000 | 0.003 | |
| downSampleCells | 0.697 | 0.036 | 0.733 | |
| downSampleDepth | 0.574 | 0.000 | 0.574 | |
| expData-ANY-character-method | 0.346 | 0.007 | 0.354 | |
| expData-set-ANY-character-CharacterOrNullOrMissing-logical-method | 0.377 | 0.028 | 0.405 | |
| expData-set | 0.375 | 0.000 | 0.375 | |
| expData | 0.332 | 0.004 | 0.336 | |
| expDataNames-ANY-method | 0.32 | 0.00 | 0.32 | |
| expDataNames | 0.313 | 0.003 | 0.317 | |
| expDeleteDataTag | 0.031 | 0.009 | 0.039 | |
| expSetDataTag | 0.025 | 0.000 | 0.025 | |
| expTaggedData | 0.026 | 0.000 | 0.026 | |
| exportSCE | 0.023 | 0.000 | 0.023 | |
| exportSCEtoAnnData | 0.098 | 0.000 | 0.098 | |
| exportSCEtoFlatFile | 0.095 | 0.000 | 0.095 | |
| featureIndex | 0.037 | 0.000 | 0.037 | |
| generateSimulatedData | 0.030 | 0.015 | 0.046 | |
| getBiomarker | 0.053 | 0.000 | 0.053 | |
| getDEGTopTable | 0.920 | 0.028 | 0.949 | |
| getDiffAbundanceResults | 0.04 | 0.00 | 0.04 | |