Vince Buffalo
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/qrqc |
| git_branch: RELEASE_3_16 |
| git_last_commit: a21e0d0 |
| git_last_commit_date: 2022-11-01 11:05:47 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:47 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the qrqc package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qrqc.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1566/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| qrqc 1.52.0 (landing page) Vince Buffalo
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: qrqc |
| Version: 1.52.0 |
| Command: rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=qrqc.buildbin-libdir qrqc_1.52.0.tar.gz |
| StartedAt: 2023-04-11 08:33:42 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:35:06 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 83.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: qrqc_1.52.0.zip |
| PackageFileSize: 702.6 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=qrqc.buildbin-libdir qrqc_1.52.0.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'qrqc' ...
** using staged installation
** libs
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_io.c -o R_init_io.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c io.c -o io.o
In file included from io.c:12:
F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include/htslib/kseq.h:171:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
171 | SCOPE void kseq_destroy(kseq_t *ks) \
| ^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include/htslib/kseq.h:237:2: note: in expansion of macro '__KSEQ_BASIC'
237 | __KSEQ_BASIC(SCOPE, type_t) \
| ^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/include/htslib/kseq.h:240:35: note: in expansion of macro 'KSEQ_INIT2'
240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
| ^~~~~~~~~~
io.c:29:1: note: in expansion of macro 'KSEQ_INIT'
29 | KSEQ_INIT(FILE_TYPE*, gzreadclone)
| ^~~~~~~~~
gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o F:/biocbuild/bbs-3.16-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -lz -lm -lbz2 -llzma -lcurl -lidn2 -lunistring -liconv -lssl -lcrypto -lcrypt32 -lwsock32 -lwldap32 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lzstd -lregex -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/qrqc.buildbin-libdir/00LOCK-qrqc/00new/qrqc/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'qrqc' as qrqc_1.52.0.zip
* DONE (qrqc)