| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-03-20 11:05:09 -0400 (Mon, 20 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4516 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" | 4295 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4324 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the onlineFDR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/onlineFDR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1400/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| onlineFDR 2.6.0 (landing page) David S. Robertson
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: onlineFDR |
| Version: 2.6.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:onlineFDR.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings onlineFDR_2.6.0.tar.gz |
| StartedAt: 2023-03-17 22:33:51 -0400 (Fri, 17 Mar 2023) |
| EndedAt: 2023-03-17 22:34:18 -0400 (Fri, 17 Mar 2023) |
| EllapsedTime: 26.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: onlineFDR.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:onlineFDR.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings onlineFDR_2.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/onlineFDR.Rcheck’
* using R version 4.2.2 (2022-10-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘onlineFDR/DESCRIPTION’ ... OK
* this is package ‘onlineFDR’ version ‘2.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘onlineFDR’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 10.4Mb
sub-directories of 1Mb or more:
libs 10.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘advanced-usage.Rmd’ using ‘UTF-8’... OK
‘onlineFDR.Rmd’ using ‘UTF-8’... OK
‘theory.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.16-bioc/meat/onlineFDR.Rcheck/00check.log’
for details.
onlineFDR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL onlineFDR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’ * installing *source* package ‘onlineFDR’ ... ** using staged installation ** libs g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c addis.cpp -o addis.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c addis_spending.cpp -o addis_spending.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c alphainvesting.cpp -o alphainvesting.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c lond.cpp -o lond.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c londstar.cpp -o londstar.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c lord.cpp -o lord.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c lordstar.cpp -o lordstar.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c online_fallback.cpp -o online_fallback.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c saffron.cpp -o saffron.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -Wall -c saffronstar.cpp -o saffronstar.o g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o onlineFDR.so RcppExports.o addis.o addis_spending.o alphainvesting.o lond.o londstar.o lord.o lordstar.o online_fallback.o saffron.o saffronstar.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.16-bioc/R/library/00LOCK-onlineFDR/00new/onlineFDR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (onlineFDR)
onlineFDR.Rcheck/tests/testthat.Rout
R version 4.2.2 (2022-10-31) -- "Innocent and Trusting"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(onlineFDR)
>
> test_check("onlineFDR")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 181 ]
>
> proc.time()
user system elapsed
1.589 0.059 1.630
onlineFDR.Rcheck/onlineFDR-Ex.timings
| name | user | system | elapsed | |
| ADDIS | 0.014 | 0.000 | 0.014 | |
| ADDIS_spending | 0.003 | 0.000 | 0.003 | |
| Alpha_investing | 0.007 | 0.000 | 0.007 | |
| Alpha_spending | 0.007 | 0.000 | 0.007 | |
| BatchBH | 0.004 | 0.000 | 0.004 | |
| BatchPRDS | 0.003 | 0.000 | 0.002 | |
| BatchStBH | 0.006 | 0.000 | 0.006 | |
| LOND | 0.006 | 0.000 | 0.005 | |
| LONDstar | 0.005 | 0.000 | 0.004 | |
| LORD | 0.009 | 0.000 | 0.008 | |
| LORDstar | 0.004 | 0.000 | 0.004 | |
| SAFFRON | 0.006 | 0.000 | 0.006 | |
| SAFFRONstar | 0.004 | 0.000 | 0.004 | |
| StoreyBH | 0.002 | 0.000 | 0.001 | |
| online_fallback | 0.008 | 0.000 | 0.009 | |
| supLORD | 0.233 | 0.000 | 0.233 | |