Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:11 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the mogsa package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mogsa.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1245/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mogsa 1.32.0 (landing page) Chen Meng
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: mogsa |
Version: 1.32.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:mogsa.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings mogsa_1.32.0.tar.gz |
StartedAt: 2023-04-10 22:05:46 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 22:09:36 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 230.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mogsa.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:mogsa.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings mogsa_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/mogsa.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘mogsa/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mogsa’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mogsa’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘moCluster-knitr.Rnw’... OK ‘mogsa-knitr.Rnw’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
mogsa.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL mogsa ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘mogsa’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mogsa)
mogsa.Rcheck/mogsa-Ex.timings
name | user | system | elapsed | |
GIS | 0.156 | 0.012 | 0.168 | |
annotate.gs | 0.115 | 0.000 | 0.114 | |
bootMbpca | 0 | 0 | 0 | |
bootMoa | 0 | 0 | 0 | |
box.gs.feature | 0.163 | 0.008 | 0.171 | |
combine-methods | 0.184 | 0.000 | 0.184 | |
decompose.gs.group | 0.584 | 0.008 | 0.592 | |
decompose.gs.ind | 0.096 | 0.008 | 0.105 | |
distMoa | 0.215 | 0.012 | 0.227 | |
getmgsa | 0.107 | 0.000 | 0.106 | |
matpower | 0.001 | 0.000 | 0.000 | |
mbpca | 2.449 | 0.052 | 2.500 | |
mgsa-class | 0.183 | 0.008 | 0.190 | |
moGap | 1.485 | 0.008 | 1.493 | |
moa-class | 0.086 | 0.000 | 0.087 | |
moa | 0.613 | 0.020 | 0.634 | |
moa.sup-class | 0.094 | 0.000 | 0.094 | |
moaCoef | 0.226 | 0.000 | 0.225 | |
moaScore | 0.226 | 0.000 | 0.225 | |
mogsa-package | 0.193 | 0.000 | 0.193 | |
mogsa | 0.269 | 0.000 | 0.268 | |
pairwise.rv | 0.011 | 0.000 | 0.010 | |
plotGS | 0.118 | 0.000 | 0.117 | |
prepGraphite | 0.273 | 0.004 | 0.276 | |
prepMsigDB | 0.001 | 0.000 | 0.002 | |
prepSupMoa | 2.686 | 0.040 | 2.726 | |
softK | 0 | 0 | 0 | |
sup.moa | 0.279 | 0.007 | 0.287 | |
wsvd | 0.001 | 0.001 | 0.001 | |