Benjamin Story
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/mitoClone2 |
| git_branch: RELEASE_3_16 |
| git_last_commit: 77f24af |
| git_last_commit_date: 2022-11-01 11:25:23 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:06:15 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mitoClone2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mitoClone2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1229/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mitoClone2 1.4.0 (landing page) Benjamin Story
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: mitoClone2 |
| Version: 1.4.0 |
| Command: rm -rf mitoClone2.buildbin-libdir && mkdir mitoClone2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mitoClone2_1.4.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mitoClone2.buildbin-libdir |
| StartedAt: 2023-04-10 23:52:36 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 23:53:46 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 70.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: mitoClone2_1.4.0.tgz |
| PackageFileSize: 1.885 MiB |
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### Running command:
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### rm -rf mitoClone2.buildbin-libdir && mkdir mitoClone2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mitoClone2_1.4.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mitoClone2.buildbin-libdir
###
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mitoClone2.buildbin-libdir mitoClone2_1.4.0.tar.gz'
>>>>>>>
* installing *source* package ‘mitoClone2’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -D_FILE_OFFSET_BITS=64 ../inst/SCITEpkg/*.cpp -o scite
../inst/SCITEpkg/mcmcBinTreeMove.cpp:75:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
}
^
1 warning generated.
mkdir -p "/Users/biocbuild/bbs-3.16-bioc/meat/mitoClone2.buildbin-libdir/00LOCK-mitoClone2/00new/mitoClone2/SCITE/"
cp scite "/Users/biocbuild/bbs-3.16-bioc/meat/mitoClone2.buildbin-libdir/00LOCK-mitoClone2/00new/mitoClone2/SCITE/"
rm scite
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhtslib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c bam2R_10x.cpp -o bam2R_10x.o
bam2R_10x.cpp:6:2: warning: '/*' within block comment [-Wcomment]
/**************************************************************************************
^
bam2R_10x.cpp:8:1: warning: '/*' within block comment [-Wcomment]
/**********************************************************************
^
bam2R_10x.cpp:75:10: warning: unused variable 'bc_absent' [-Wunused-variable]
int bc_absent;
^
bam2R_10x.cpp:158:16: warning: unused variable 'iter' [-Wunused-variable]
hts_itr_t *iter = NULL;
^
bam2R_10x.cpp:161:9: warning: unused variable 'c' [-Wunused-variable]
int c = 0;
^
5 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mitoClone2.so bam2R_10x.o /Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhtslib/usrlib/libhts.a -lcurl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/mitoClone2.buildbin-libdir/00LOCK-mitoClone2/00new/mitoClone2/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mitoClone2)
>>>>>>>
>>>>>>> FIXING LINKS FOR mitoClone2.buildbin-libdir/mitoClone2/libs/mitoClone2.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "mitoClone2.buildbin-libdir/mitoClone2/libs/mitoClone2.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "mitoClone2.buildbin-libdir/mitoClone2/libs/mitoClone2.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "mitoClone2.buildbin-libdir/mitoClone2/libs/mitoClone2.so"