Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:09 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the memes package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1131/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
memes 1.6.0 (landing page) Spencer Nystrom
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: memes |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings memes_1.6.0.tar.gz |
StartedAt: 2023-04-10 21:45:50 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 21:48:54 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 184.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: memes.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings memes_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/memes.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘memes/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘memes’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘memes’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_sequence 7.082 0.223 7.307 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘core_ame.Rmd’ using ‘UTF-8’... OK ‘core_dreme.Rmd’ using ‘UTF-8’... OK ‘core_fimo.Rmd’ using ‘UTF-8’... OK ‘core_tomtom.Rmd’ using ‘UTF-8’... OK ‘install_guide.Rmd’ using ‘UTF-8’... OK ‘integrative_analysis.Rmd’ using ‘UTF-8’... OK ‘tidy_motifs.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
memes.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL memes ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘memes’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memes)
memes.Rcheck/memes-Ex.timings
name | user | system | elapsed | |
add_sequence | 7.082 | 0.223 | 7.307 | |
ame_compare_heatmap_methods | 0.932 | 0.072 | 1.005 | |
check_meme_install | 0.570 | 0.020 | 0.589 | |
drop_best_match | 0.007 | 0.000 | 0.007 | |
example_ame | 0.06 | 0.00 | 0.06 | |
example_ame_large | 0.038 | 0.000 | 0.038 | |
force_best_match | 0.044 | 0.004 | 0.047 | |
get_sequence | 0.361 | 0.008 | 0.369 | |
has_duplicate_motifs | 1.167 | 0.048 | 1.215 | |
importAme | 0.242 | 0.029 | 0.273 | |
importDremeXML | 0.263 | 0.000 | 0.263 | |
importFimo | 0.055 | 0.020 | 0.070 | |
importMeme | 0.117 | 0.000 | 0.117 | |
importStremeXML | 0.187 | 0.000 | 0.187 | |
importTomTomXML | 0.402 | 0.000 | 0.402 | |
meme_is_installed | 0.052 | 0.000 | 0.052 | |
nest_tomtom | 0.052 | 0.000 | 0.052 | |
plot_ame_heatmap | 0.425 | 0.000 | 0.425 | |
plot_sequence_heatmap | 2.455 | 0.080 | 2.535 | |
remove_duplicate_motifs | 0.002 | 0.000 | 0.002 | |
runAme | 0.044 | 0.000 | 0.044 | |
runDreme | 0.042 | 0.000 | 0.042 | |
runFimo | 0.042 | 0.000 | 0.042 | |
runMeme | 0.043 | 0.000 | 0.042 | |
runTomTom | 0.042 | 0.003 | 0.046 | |
update_best_match | 0.093 | 0.001 | 0.093 | |
view_tomtom_hits | 0.892 | 0.003 | 0.896 | |
write_fasta | 0.002 | 0.000 | 0.002 | |