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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:matter.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings matter_2.0.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/matter.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘matter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘matter’ version ‘2.0.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘matter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘matter-2-guide.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-bioc/meat/matter.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL matter
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘matter’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c altrep.cpp -o altrep.o
In file included from matter.h:5,
                 from altrep.cpp:3:
atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’:
atoms.h:191:22: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare]
  191 |     if ( j <= i && i < j + len ) {
      |                    ~~^~~~~~~~~
atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’:
atoms.h:644:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  644 |    for ( index_t i = 0; i < ngroups; i++ )
      |                         ~~^~~~~~~~~
atoms.h:654:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  654 |    for ( index_t i = 0; i < ngroups; i++ )
      |                         ~~^~~~~~~~~
In file included from altrep.cpp:3:
matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’:
matter.h:178:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  178 |    if ( size > XLENGTH(value) && stride != 0 ) {
      |         ~~~~~^~~~~~~~~~~~~~~~
matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’:
matter.h:634:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  634 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’:
matter.h:658:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  658 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’:
matter.h:730:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  730 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’:
matter.h:754:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  754 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
In file included from atoms.h:9,
                 from matter.h:5,
                 from altrep.cpp:3:
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’:
drle.h:422:53:   required from here
drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’:
drle.h:583:32:   required from here
drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
In file included from altrep.cpp:3:
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:153:32:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |    size = len - i > size ? size : len - i;
      |           ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:157:36:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:165:33:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:184:44:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |    size = len - i > size ? size : len - i;
      |           ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:187:48:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:193:45:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:399:32:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:403:36:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:411:33:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:436:44:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:439:48:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:445:45:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
In file included from atoms.h:9,
                 from matter.h:5,
                 from altrep.cpp:3:
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  533 |  while ( i < XLENGTH(indx) && j < nruns )
      |          ~~^~~~~~~~~~~~~~~
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:4:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:599:29:   required from here
drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  352 |    for ( j = 0; j < ni; j++ )
      |                 ~~^~~~
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:4:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:603:29:   required from here
drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matter.h:6,
                 from altrep.cpp:3:
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:153:32:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  187 |    for ( index_t j = 0; j < size; j++ )
      |                         ~~^~~~~~
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:157:36:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:165:33:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from altrep.cpp:2:
matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:116:5:   required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’
matter.h:209:31:   required from here
matterDefines.h:320:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  320 |    for ( size_t j = 0; j < XLENGTH(indx); j++ )
      |                        ~~^~~~~~~~~~~~~~~
In file included from matter.h:5,
                 from altrep.cpp:3:
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c init.cpp -o init.o
In file included from matterExports.h:6,
                 from init.cpp:3:
atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’:
atoms.h:191:22: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare]
  191 |     if ( j <= i && i < j + len ) {
      |                    ~~^~~~~~~~~
atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’:
atoms.h:644:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  644 |    for ( index_t i = 0; i < ngroups; i++ )
      |                         ~~^~~~~~~~~
atoms.h:654:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  654 |    for ( index_t i = 0; i < ngroups; i++ )
      |                         ~~^~~~~~~~~
In file included from matterExports.h:7,
                 from init.cpp:3:
matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’:
matter.h:178:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  178 |    if ( size > XLENGTH(value) && stride != 0 ) {
      |         ~~~~~^~~~~~~~~~~~~~~~
matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’:
matter.h:634:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  634 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’:
matter.h:658:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  658 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’:
matter.h:730:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  730 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’:
matter.h:754:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  754 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
In file included from matterExports.h:5,
                 from init.cpp:3:
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’:
drle.h:422:53:   required from here
drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’:
drle.h:583:32:   required from here
drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
In file included from matterExports.h:7,
                 from init.cpp:3:
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:153:32:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |    size = len - i > size ? size : len - i;
      |           ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:157:36:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:165:33:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:184:44:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |    size = len - i > size ? size : len - i;
      |           ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:187:48:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:193:45:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:399:32:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:403:36:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:411:33:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:436:44:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:439:48:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:445:45:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
In file included from matterExports.h:9,
                 from init.cpp:3:
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:575:47:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:578:50:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:588:47:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:591:50:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
In file included from matterExports.h:5,
                 from init.cpp:3:
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  533 |  while ( i < XLENGTH(indx) && j < nruns )
      |          ~~^~~~~~~~~~~~~~~
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:4:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:599:29:   required from here
drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  352 |    for ( j = 0; j < ni; j++ )
      |                 ~~^~~~
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:4:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:603:29:   required from here
drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matter.h:6,
                 from matterExports.h:7,
                 from init.cpp:3:
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:153:32:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  187 |    for ( index_t j = 0; j < size; j++ )
      |                         ~~^~~~~~
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:157:36:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:165:33:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from drle.h:4,
                 from matterExports.h:5,
                 from init.cpp:3:
matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:116:5:   required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’
matter.h:209:31:   required from here
matterDefines.h:320:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  320 |    for ( size_t j = 0; j < XLENGTH(indx); j++ )
      |                        ~~^~~~~~~~~~~~~~~
In file included from matterExports.h:8,
                 from init.cpp:3:
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:290:72:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  225 |    for ( index_t i = pos[j]; i < xlen; i++ )
      |                              ~~^~~~~~
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:294:72:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:298:72:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:308:69:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:312:69:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:316:69:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from init.cpp:3:
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:47:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:50:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:446:47:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:449:50:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
In file included from matterExports.h:6,
                 from init.cpp:3:
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:477:52:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:481:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:489:54:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:520:64:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:523:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:529:66:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
In file included from search.h:5,
                 from matterExports.h:8,
                 from init.cpp:3:
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:290:72:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   97 |   for ( index_t i = init; i < end && i >= 0; i += k )
      |                           ~~^~~~~
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:294:72:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:298:72:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:308:69:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:312:69:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:316:69:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from init.cpp:3:
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = int; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:5:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:47:   required from here
sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  190 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = double; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:5:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:50:   required from here
sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
In file included from init.cpp:4:
altrep.h: At global scope:
altrep.h:18:25: warning: ‘matter_altstring’ defined but not used [-Wunused-variable]
   18 | static R_altrep_class_t matter_altstring;
      |                         ^~~~~~~~~~~~~~~~
altrep.h:17:25: warning: ‘matter_altreal’ defined but not used [-Wunused-variable]
   17 | static R_altrep_class_t matter_altreal;
      |                         ^~~~~~~~~~~~~~
altrep.h:16:25: warning: ‘matter_altinteger’ defined but not used [-Wunused-variable]
   16 | static R_altrep_class_t matter_altinteger;
      |                         ^~~~~~~~~~~~~~~~~
altrep.h:15:25: warning: ‘matter_altlogical’ defined but not used [-Wunused-variable]
   15 | static R_altrep_class_t matter_altlogical;
      |                         ^~~~~~~~~~~~~~~~~
altrep.h:14:25: warning: ‘matter_altraw’ defined but not used [-Wunused-variable]
   14 | static R_altrep_class_t matter_altraw;
      |                         ^~~~~~~~~~~~~
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c matterExports.cpp -o matterExports.o
In file included from matterExports.h:6,
                 from matterExports.cpp:2:
atoms.h: In member function ‘AtomInfo Atoms::find_atom(index_t, int)’:
atoms.h:191:22: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare]
  191 |     if ( j <= i && i < j + len ) {
      |                    ~~^~~~~~~~~
atoms.h: In member function ‘SEXPREC* Atoms::regroup_index(size_t)’:
atoms.h:644:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  644 |    for ( index_t i = 0; i < ngroups; i++ )
      |                         ~~^~~~~~~~~
atoms.h:654:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  654 |    for ( index_t i = 0; i < ngroups; i++ )
      |                         ~~^~~~~~~~~
In file included from matterExports.h:7,
                 from matterExports.cpp:2:
matter.h: In member function ‘void MatterArray::set_region(index_t, size_t, SEXP)’:
matter.h:178:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  178 |    if ( size > XLENGTH(value) && stride != 0 ) {
      |         ~~~~~^~~~~~~~~~~~~~~~
matter.h: In member function ‘SEXPREC* MatterList::get_elements(SEXP, SEXP)’:
matter.h:634:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  634 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘void MatterList::set_elements(SEXP, SEXP, SEXP)’:
matter.h:658:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  658 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘SEXPREC* MatterStringList::get_strings(SEXP, SEXP)’:
matter.h:730:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  730 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
matter.h: In member function ‘void MatterStringList::set_strings(SEXP, SEXP, SEXP)’:
matter.h:754:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  754 |    for ( size_t k = 0; k < len; k++ )
      |                        ~~^~~~~
In file included from matterExports.h:5,
                 from matterExports.cpp:2:
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = int; SEXP = SEXPREC*]’:
drle.h:422:53:   required from here
drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h: In instantiation of ‘CompressedVector<T>::CompressedVector(SEXP) [with T = double; SEXP = SEXPREC*]’:
drle.h:583:32:   required from here
drle.h:209:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  209 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
drle.h:213:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  213 |       for ( size_t i = 0; i < _truelength; i++ )
      |                           ~~^~~~~~~~~~~~~
In file included from matterExports.h:7,
                 from matterExports.cpp:2:
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:153:32:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   73 |    size = len - i > size ? size : len - i;
      |           ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:157:36:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:165:33:   required from here
matter.h:73:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:184:44:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |    size = len - i > size ? size : len - i;
      |           ~~~~~~~~^~~~~~
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:187:48:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterArray::set_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:193:45:   required from here
matter.h:96:19: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:399:32:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:403:36:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::get_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:411:33:   required from here
matter.h:293:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  293 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:310:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  310 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:436:44:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:439:48:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
matter.h: In instantiation of ‘size_t MatterMatrix::set_submatrix(SEXP, SEXP, T*, int) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:445:45:   required from here
matter.h:348:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  348 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
matter.h:367:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  367 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
In file included from matterExports.h:9,
                 from matterExports.cpp:2:
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:575:47:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:578:50:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:588:47:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
sparse.h: In instantiation of ‘size_t SparseMatrix::get_submatrix(SEXP, SEXP, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
sparse.h:591:50:   required from here
sparse.h:528:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  528 |     for ( size_t k = 0; k < nr; k++ )
      |                         ~~^~~~
sparse.h:545:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  545 |     for ( size_t k = 0; k < nc; k++ )
      |                         ~~^~~~
In file included from matterExports.h:6,
                 from matterExports.cpp:2:
atoms.h: In instantiation of ‘SEXPREC* Atoms::subset_index(T*, size_t, bool) [with T = int; SEXP = SEXPREC*; size_t = long unsigned int]’:
matterExports.cpp:172:57:   required from here
atoms.h:552:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  552 |     while ( i < size )
      |             ~~^~~~~~
atoms.h:572:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  572 |     while ( i < size )
      |             ~~^~~~~~
atoms.h: In instantiation of ‘SEXPREC* Atoms::subset_index(T*, size_t, bool) [with T = double; SEXP = SEXPREC*; size_t = long unsigned int]’:
matterExports.cpp:174:57:   required from here
atoms.h:552:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  552 |     while ( i < size )
      |             ~~^~~~~~
atoms.h:572:15: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  572 |     while ( i < size )
      |             ~~^~~~~~
In file included from search.h:5,
                 from matterExports.h:8,
                 from matterExports.cpp:2:
signal.h: In instantiation of ‘void bin_vector(T*, int, int*, int*, double*, int, int) [with T = int]’:
matterExports.cpp:288:49:   required from here
signal.h:239:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  239 |  for ( size_t i = 0; i < nbin; i++ ) {
      |                      ~~^~~~~~
signal.h:245:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |   for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
signal.h:245:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |   for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
      |                                                  ~~^~~
signal.h: In instantiation of ‘void bin_vector(T*, int, int*, int*, double*, int, int) [with T = double]’:
matterExports.cpp:292:49:   required from here
signal.h:239:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  239 |  for ( size_t i = 0; i < nbin; i++ ) {
      |                      ~~^~~~~~
signal.h:245:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |   for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
signal.h:245:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  245 |   for ( size_t j = lower[i] - 1; j < upper[i] && j < n; j++ )
      |                                                  ~~^~~
signal.h: In instantiation of ‘size_t local_maxima(T*, size_t, int, int*) [with T = int; size_t = long unsigned int]’:
matterExports.cpp:308:38:   required from here
signal.h:272:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  272 |  for ( int i = 0; i < n; i++ )
      |                   ~~^~~
signal.h:275:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |   if ( i < r || i > n - r )
      |                 ~~^~~~~~~
signal.h:278:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  278 |   b = (i + r) < n - 1 ? (i + r) : n - 1;
      |       ~~~~~~~~^~~~~~~
signal.h: In instantiation of ‘size_t local_maxima(T*, size_t, int, int*) [with T = double; size_t = long unsigned int]’:
matterExports.cpp:312:38:   required from here
signal.h:272:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  272 |  for ( int i = 0; i < n; i++ )
      |                   ~~^~~
signal.h:275:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |   if ( i < r || i > n - r )
      |                 ~~^~~~~~~
signal.h:278:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  278 |   b = (i + r) < n - 1 ? (i + r) : n - 1;
      |       ~~~~~~~~^~~~~~~
signal.h: In instantiation of ‘size_t peak_boundaries(T*, size_t, int, int*, size_t, int*, int*) [with T = int; size_t = long unsigned int]’:
matterExports.cpp:331:48:   required from here
signal.h:304:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  304 |  for ( int i = 0; i < npeaks; i++ )
      |                   ~~^~~~~~~~
signal.h:329:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  329 |   for ( int j = peaks[i] + 1; j < n; j++ )
      |                               ~~^~~
signal.h:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  335 |     int b = (j + r) < n - 1 ? (j + r) : n - 1;
      |             ~~~~~~~~^~~~~~~
signal.h: In instantiation of ‘size_t peak_boundaries(T*, size_t, int, int*, size_t, int*, int*) [with T = double; size_t = long unsigned int]’:
matterExports.cpp:336:48:   required from here
signal.h:304:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  304 |  for ( int i = 0; i < npeaks; i++ )
      |                   ~~^~~~~~~~
signal.h:329:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  329 |   for ( int j = peaks[i] + 1; j < n; j++ )
      |                               ~~^~~
signal.h:335:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  335 |     int b = (j + r) < n - 1 ? (j + r) : n - 1;
      |             ~~~~~~~~^~~~~~~
In file included from matterExports.h:5,
                 from matterExports.cpp:2:
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  533 |  while ( i < XLENGTH(indx) && j < nruns )
      |          ~~^~~~~~~~~~~~~~~
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = int; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:580:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:557:22:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t recode_drle(CompressedVector<T>, SEXP, Tval*, Tval*, Tlen*, size_t) [with Tval = double; Tlen = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:561:25:   required from ‘SEXPREC* recode_drle(CompressedVector<T>, SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:584:30:   required from here
drle.h:533:12: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = int; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:4:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = int; SEXP = SEXPREC*]’
drle.h:599:29:   required from here
drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  352 |    for ( j = 0; j < ni; j++ )
      |                 ~~^~~~
drle.h: In instantiation of ‘size_t CompressedVector<T>::getElements(SEXP, T*) [with T = double; size_t = long unsigned int; SEXP = SEXPREC*]’:
drle.h:369:4:   required from ‘SEXPREC* CompressedVector<T>::getElements(SEXP) [with T = double; SEXP = SEXPREC*]’
drle.h:603:29:   required from here
drle.h:352:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matter.h:6,
                 from matterExports.h:7,
                 from matterExports.cpp:2:
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matter.h:153:32:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  187 |    for ( index_t j = 0; j < size; j++ )
      |                         ~~^~~~~~
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matter.h:157:36:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
ops.h: In instantiation of ‘size_t DeferredOps::apply(T*, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’:
matter.h:83:5:   required from ‘size_t MatterArray::get_region(index_t, size_t, T*, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matter.h:165:33:   required from here
ops.h:187:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from drle.h:4,
                 from matterExports.h:5,
                 from matterExports.cpp:2:
matterDefines.h: In instantiation of ‘size_t ArrayInterface::transpose_index(T*, SEXP, bool) [with T = long int; size_t = long unsigned int; SEXP = SEXPREC*]’:
matter.h:116:5:   required from ‘size_t MatterArray::get_elements(SEXP, T*, int) [with T = unsigned char; size_t = long unsigned int; SEXP = SEXPREC*]’
matter.h:209:31:   required from here
matterDefines.h:320:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  320 |    for ( size_t j = 0; j < XLENGTH(indx); j++ )
      |                        ~~^~~~~~~~~~~~~~~
In file included from matterExports.h:8,
                 from matterExports.cpp:2:
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:290:72:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  225 |    for ( index_t i = pos[j]; i < xlen; i++ )
      |                              ~~^~~~~~
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:294:72:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:298:72:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:308:69:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:312:69:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
search.h: In instantiation of ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’:
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:316:69:   required from here
search.h:225:32: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from matterExports.cpp:2:
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:47:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:50:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:446:47:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
sparse.h: In instantiation of ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’:
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = double; size_t = long unsigned int; index_t = long int]’
sparse.h:449:50:   required from here
sparse.h:336:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  336 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h:362:24: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  362 |      if ( ii < 0 || ii >= size )
      |                     ~~~^~~~~~~
In file included from matterExports.h:6,
                 from matterExports.cpp:2:
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:69:42:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:73:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:77:44:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = unsigned char; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:98:44:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = int; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = int; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:101:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = double; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = double; size_t = long unsigned int; index_t = long int]’
matterExports.cpp:104:46:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:318:59:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:320:68:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:322:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = short unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:324:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:326:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:328:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:330:62:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = long unsigned int; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:332:63:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = float; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:334:60:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::read_atom(Tout*, int, index_t, size_t, int) [with Tin = double; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:336:61:   required from ‘size_t Atoms::get_atom(T*, int, index_t, size_t, int) [with T = char; size_t = long unsigned int; index_t = long int]’
atoms.h:383:7:   required from ‘size_t Atoms::get_region(T*, index_t, size_t, int, int) [with T = char; size_t = long unsigned int; index_t = long int]’
matter.h:493:46:   required from here
atoms.h:279:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  279 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:288:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  288 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = char; size_t = long unsigned int; index_t = long int]’:
atoms.h:347:60:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned char; size_t = long unsigned int; index_t = long int]’:
atoms.h:349:69:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short int; size_t = long unsigned int; index_t = long int]’:
atoms.h:351:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = short unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:353:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = int; size_t = long unsigned int; index_t = long int]’:
atoms.h:355:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:357:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long int; size_t = long unsigned int; index_t = long int]’:
atoms.h:359:63:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = long unsigned int; size_t = long unsigned int; index_t = long int]’:
atoms.h:361:64:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = float; size_t = long unsigned int; index_t = long int]’:
atoms.h:363:61:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
atoms.h: In instantiation of ‘size_t Atoms::write_atom(Tin*, int, index_t, size_t, int) [with Tin = const char; Tout = double; size_t = long unsigned int; index_t = long int]’:
atoms.h:365:62:   required from ‘size_t Atoms::set_atom(T*, int, index_t, size_t, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
atoms.h:405:7:   required from ‘size_t Atoms::set_region(T*, index_t, size_t, int, int) [with T = const char; size_t = long unsigned int; index_t = long int]’
matter.h:536:52:   required from here
atoms.h:298:20: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  298 |    if ( pos + size >= extent(atom) )
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
atoms.h:301:27: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  301 |    for ( index_t i = 0; i < size; i++ )
      |                         ~~^~~~~~
In file included from search.h:5,
                 from matterExports.h:8,
                 from matterExports.cpp:2:
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:290:72:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   97 |   for ( index_t i = init; i < end && i >= 0; i += k )
      |                           ~~^~~~~
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:294:72:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = int; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = int; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:298:72:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = int; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = int; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:308:69:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = double; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = double; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:312:69:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
signal.h: In instantiation of ‘Ty interp1(Tx, Tx*, Ty*, size_t, size_t, double, int, int, bool) [with Tx = SEXPREC*; Ty = double; size_t = long unsigned int]’:
search.h:229:30:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, Tkey*, Tval*, size_t, size_t, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int]’
search.h:275:25:   required from ‘index_t do_approx_search(Tval*, Tkey*, size_t, SEXP, SEXP, double, int, Tval, int, bool, int) [with Tkey = SEXPREC*; Tval = double; index_t = long int; size_t = long unsigned int; SEXP = SEXPREC*]’
search.h:316:69:   required from here
signal.h:97:29: warning: comparison of integer expressions of different signedness: ‘index_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
In file included from matterExports.h:9,
                 from matterExports.cpp:2:
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = int; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:5:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = int; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:433:47:   required from here
sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
  190 |    if ( i < 0 || i + size > sparse_extent() )
      |                  ~~~~~~~~~^~~~~~~~~~~~~~~~~
sparse.h: In instantiation of ‘void SparseArray::copy_domain(index_t, size_t, T*) [with T = double; index_t = long int; size_t = long unsigned int]’:
sparse.h:349:5:   required from ‘size_t SparseArray::get_compressed_region(index_t, index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:402:9:   required from ‘size_t SparseArray::get_region(index_t, size_t, Tval*, int) [with Tind = double; Tval = int; size_t = long unsigned int; index_t = long int]’
sparse.h:436:50:   required from here
sparse.h:190:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘index_t’ {aka ‘long int’} [-Wsign-compare]
In file included from matterExports.h:8,
                 from matterExports.cpp:2:
search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = double]’:
search.h:104:27: warning: ‘delta’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  104 |   else if ( (mid == right && delta > 0) && (nearest || dright <= tol) )
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~
search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = SEXPREC*]’:
search.h:104:27: warning: ‘delta’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  104 |   else if ( (mid == right && delta > 0) && (nearest || dright <= tol) )
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~
search.h: In function ‘index_t binary_search(T, T*, size_t, size_t, double, int, int, bool, bool, int) [with T = int]’:
search.h:104:27: warning: ‘delta’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  104 |   else if ( (mid == right && delta > 0) && (nearest || dright <= tol) )
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o matter.so altrep.o init.o matterExports.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-matter/00new/matter/libs
** R
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘apply’ in package ‘matter’
Creating a new generic function for ‘scale’ in package ‘matter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matter)

R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(testthat)
> library(matter)
Loading required package: BiocParallel
Loading required package: Matrix

Attaching package: 'matter'

The following objects are masked from 'package:base':

    apply, scale

> 
> test_check("matter")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 725 ]
> 
> proc.time()
   user  system elapsed 
  8.587   0.342   8.912