| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:09 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the glmSparseNet package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/glmSparseNet.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 826/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| glmSparseNet 1.16.0 (landing page) André Veríssimo
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: glmSparseNet |
| Version: 1.16.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data glmSparseNet |
| StartedAt: 2023-04-10 16:42:46 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 16:46:04 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 197.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data glmSparseNet ### ############################################################################## ############################################################################## * checking for file ‘glmSparseNet/DESCRIPTION’ ... OK * preparing ‘glmSparseNet’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘example_brca_logistic.Rmd’ using rmarkdown Quitting from lines 54-57 (example_brca_logistic.Rmd) Error: processing vignette 'example_brca_logistic.Rmd' failed with diagnostics: different row counts implied by arguments --- failed re-building ‘example_brca_logistic.Rmd’ --- re-building ‘example_brca_protein-protein-interactions_survival.Rmd’ using rmarkdown Quitting from lines 135-138 (example_brca_protein-protein-interactions_survival.Rmd) Error: processing vignette 'example_brca_protein-protein-interactions_survival.Rmd' failed with diagnostics: different row counts implied by arguments --- failed re-building ‘example_brca_protein-protein-interactions_survival.Rmd’ --- re-building ‘example_brca_survival.Rmd’ using rmarkdown Quitting from lines 54-57 (example_brca_survival.Rmd) Error: processing vignette 'example_brca_survival.Rmd' failed with diagnostics: different row counts implied by arguments --- failed re-building ‘example_brca_survival.Rmd’ --- re-building ‘example_prad_survival.Rmd’ using rmarkdown --- finished re-building ‘example_prad_survival.Rmd’ --- re-building ‘example_skcm_survival.Rmd’ using rmarkdown --- finished re-building ‘example_skcm_survival.Rmd’ --- re-building ‘separate2GroupsCox.Rmd’ using rmarkdown --- finished re-building ‘separate2GroupsCox.Rmd’ SUMMARY: processing the following files failed: ‘example_brca_logistic.Rmd’ ‘example_brca_protein-protein-interactions_survival.Rmd’ ‘example_brca_survival.Rmd’ Error: Vignette re-building failed. Execution halted