Xiuwen Zheng
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/gdsfmt |
| git_branch: RELEASE_3_16 |
| git_last_commit: d5fa465 |
| git_last_commit_date: 2023-03-31 04:54:01 -0400 (Fri, 31 Mar 2023) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:05 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the gdsfmt package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gdsfmt.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 745/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gdsfmt 1.34.1 (landing page) Xiuwen Zheng
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: gdsfmt |
| Version: 1.34.1 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:gdsfmt.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings gdsfmt_1.34.1.tar.gz |
| StartedAt: 2023-04-10 20:50:14 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 20:52:17 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 123.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gdsfmt.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:gdsfmt.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings gdsfmt_1.34.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘gdsfmt/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gdsfmt’ version ‘1.34.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gdsfmt’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 43.6Mb
sub-directories of 1Mb or more:
libs 42.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘gdsfmt.Rmd’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt.Rcheck/00check.log’
for details.
gdsfmt.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL gdsfmt ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘gdsfmt’ ... ** using staged installation ** libs g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c R_CoreArray.cpp -o R_CoreArray.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c gdsfmt.cpp -o gdsfmt.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c digest.cpp -o digest.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dAny.cpp -o CoreArray/dAny.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dBase.cpp -o CoreArray/dBase.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dFile.cpp -o CoreArray/dFile.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dRealGDS.cpp -o CoreArray/dRealGDS.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dStrGDS.cpp -o CoreArray/dStrGDS.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dStream.cpp -o CoreArray/dStream.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dSparse.cpp -o CoreArray/dSparse.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/adler32.c -o ZLIB/adler32.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/compress.c -o ZLIB/compress.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/crc32.c -o ZLIB/crc32.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/deflate.c -o ZLIB/deflate.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/infback.c -o ZLIB/infback.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/inffast.c -o ZLIB/inffast.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/inflate.c -o ZLIB/inflate.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/inftrees.c -o ZLIB/inftrees.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/trees.c -o ZLIB/trees.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/uncompr.c -o ZLIB/uncompr.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c -g0 ZLIB/zutil.c -o ZLIB/zutil.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/lz4.c -o LZ4/lz4.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/lz4hc.c -o LZ4/lz4hc.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/lz4frame.c -o LZ4/lz4frame.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray -I/usr/local/include -fpic -g -O2 -Wall -c LZ4/xxhash.c -o LZ4/xxhash.o cd XZ && tar -xzf xz-5.2.5.tar.gz cd XZ/xz-5.2.5 && \ ./configure CC="gcc" CPP="gcc -E" CXX="g++ -std=gnu++14" CXXCPP="" --build="" \ --with-pic --enable-silent-rules --quiet --disable-xz > /dev/null cd XZ/xz-5.2.5/src/liblzma && make make[1]: Entering directory '/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt/src/XZ/xz-5.2.5/src/liblzma' Making all in api make[2]: Entering directory '/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt/src/XZ/xz-5.2.5/src/liblzma/api' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt/src/XZ/xz-5.2.5/src/liblzma/api' make[2]: Entering directory '/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt/src/XZ/xz-5.2.5/src/liblzma' CC liblzma_la-tuklib_physmem.lo CC liblzma_la-tuklib_cpucores.lo CC liblzma_la-common.lo CC liblzma_la-block_util.lo CC liblzma_la-easy_preset.lo CC liblzma_la-filter_common.lo CC liblzma_la-hardware_physmem.lo CC liblzma_la-index.lo CC liblzma_la-stream_flags_common.lo CC liblzma_la-vli_size.lo CC liblzma_la-hardware_cputhreads.lo CC liblzma_la-alone_encoder.lo CC liblzma_la-block_buffer_encoder.lo CC liblzma_la-block_encoder.lo CC liblzma_la-block_header_encoder.lo CC liblzma_la-easy_buffer_encoder.lo CC liblzma_la-easy_encoder.lo CC liblzma_la-easy_encoder_memusage.lo CC liblzma_la-filter_buffer_encoder.lo CC liblzma_la-filter_encoder.lo CC liblzma_la-filter_flags_encoder.lo CC liblzma_la-index_encoder.lo CC liblzma_la-stream_buffer_encoder.lo CC liblzma_la-stream_encoder.lo CC liblzma_la-stream_flags_encoder.lo CC liblzma_la-vli_encoder.lo CC liblzma_la-outqueue.lo CC liblzma_la-stream_encoder_mt.lo CC liblzma_la-alone_decoder.lo CC liblzma_la-auto_decoder.lo CC liblzma_la-block_buffer_decoder.lo CC liblzma_la-block_decoder.lo CC liblzma_la-block_header_decoder.lo CC liblzma_la-easy_decoder_memusage.lo CC liblzma_la-filter_buffer_decoder.lo CC liblzma_la-filter_decoder.lo CC liblzma_la-filter_flags_decoder.lo CC liblzma_la-index_decoder.lo CC liblzma_la-index_hash.lo CC liblzma_la-stream_buffer_decoder.lo CC liblzma_la-stream_decoder.lo CC liblzma_la-stream_flags_decoder.lo CC liblzma_la-vli_decoder.lo CC liblzma_la-check.lo CC liblzma_la-crc32_table.lo CC liblzma_la-crc32_fast.lo CC liblzma_la-crc64_table.lo CC liblzma_la-crc64_fast.lo CC liblzma_la-sha256.lo CC liblzma_la-lz_encoder.lo CC liblzma_la-lz_encoder_mf.lo CC liblzma_la-lz_decoder.lo CC liblzma_la-lzma_encoder_presets.lo CC liblzma_la-lzma_encoder.lo CC liblzma_la-lzma_encoder_optimum_fast.lo CC liblzma_la-lzma_encoder_optimum_normal.lo CC liblzma_la-fastpos_table.lo CC liblzma_la-lzma_decoder.lo CC liblzma_la-lzma2_encoder.lo CC liblzma_la-lzma2_decoder.lo CC liblzma_la-price_table.lo CC liblzma_la-delta_common.lo CC liblzma_la-delta_encoder.lo CC liblzma_la-delta_decoder.lo CC liblzma_la-simple_coder.lo CC liblzma_la-simple_encoder.lo CC liblzma_la-simple_decoder.lo CC liblzma_la-x86.lo CC liblzma_la-powerpc.lo CC liblzma_la-ia64.lo CC liblzma_la-arm.lo CC liblzma_la-armthumb.lo CC liblzma_la-sparc.lo CCLD liblzma.la PC liblzma.pc make[2]: Leaving directory '/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt/src/XZ/xz-5.2.5/src/liblzma' make[1]: Leaving directory '/home/biocbuild/bbs-3.16-bioc/meat/gdsfmt/src/XZ/xz-5.2.5/src/liblzma' cp XZ/xz-5.2.5/src/liblzma/.libs/liblzma.a . rm -rf XZ/xz-5.2.5/dos rm -rf XZ/xz-5.2.5/po g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o gdsfmt.so R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dRealGDS.o CoreArray/dSerial.o CoreArray/dStrGDS.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dSparse.o CoreArray/dVLIntGDS.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o ./liblzma.a -lpthread -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-gdsfmt/00new/gdsfmt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gdsfmt)
gdsfmt.Rcheck/tests/runTests.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> options(test.verbose=FALSE)
> BiocGenerics:::testPackage("gdsfmt")
RUNIT TEST PROTOCOL -- Mon Apr 10 20:52:10 2023
***********************************************
Number of test functions: 25
Number of errors: 0
Number of failures: 0
1 Test Suite :
gdsfmt RUnit Tests - 25 test functions, 0 errors, 0 failures
Number of test functions: 25
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
91.091 4.738 95.977
gdsfmt.Rcheck/gdsfmt-Ex.timings
| name | user | system | elapsed | |
| add.gdsn | 0.086 | 0.004 | 0.090 | |
| addfile.gdsn | 0.006 | 0.000 | 0.006 | |
| addfolder.gdsn | 0.026 | 0.000 | 0.026 | |
| append.gdsn | 0.011 | 0.004 | 0.015 | |
| apply.gdsn | 0.025 | 0.004 | 0.028 | |
| assign.gdsn | 0.019 | 0.004 | 0.023 | |
| cache.gdsn | 0.002 | 0.000 | 0.002 | |
| cleanup.gds | 0.011 | 0.000 | 0.011 | |
| closefn.gds | 0 | 0 | 0 | |
| clusterApply.gdsn | 0.052 | 0.018 | 0.466 | |
| cnt.gdsn | 0.001 | 0.000 | 0.001 | |
| compression.gdsn | 0.005 | 0.000 | 0.005 | |
| copyto.gdsn | 0.026 | 0.000 | 0.026 | |
| createfn.gds | 0.000 | 0.006 | 0.006 | |
| delete.attr.gdsn | 0.002 | 0.002 | 0.003 | |
| delete.gdsn | 0.006 | 0.000 | 0.006 | |
| diagnosis.gds | 0.004 | 0.007 | 0.011 | |
| digest.gdsn | 0.049 | 0.000 | 0.050 | |
| exist.gdsn | 0.001 | 0.000 | 0.001 | |
| gdsfmt-package | 0.029 | 0.000 | 0.030 | |
| get.attr.gdsn | 0.000 | 0.002 | 0.003 | |
| getfile.gdsn | 0.004 | 0.005 | 0.009 | |
| getfolder.gdsn | 0.027 | 0.000 | 0.027 | |
| index.gdsn | 0.010 | 0.003 | 0.013 | |
| is.element.gdsn | 0.001 | 0.000 | 0.002 | |
| is.sparse.gdsn | 1.196 | 0.112 | 1.308 | |
| lasterr.gds | 0 | 0 | 0 | |
| ls.gdsn | 0.000 | 0.002 | 0.002 | |
| moveto.gdsn | 0.029 | 0.006 | 0.034 | |
| name.gdsn | 0.001 | 0.000 | 0.001 | |
| objdesp.gdsn | 0.004 | 0.004 | 0.009 | |
| openfn.gds | 0.002 | 0.004 | 0.006 | |
| permdim.gdsn | 0.002 | 0.008 | 0.009 | |
| print.gds.class | 0.016 | 0.000 | 0.016 | |
| put.attr.gdsn | 0.000 | 0.003 | 0.004 | |
| read.gdsn | 0.008 | 0.005 | 0.014 | |
| readex.gdsn | 0.005 | 0.001 | 0.007 | |
| readmode.gdsn | 0.000 | 0.002 | 0.003 | |
| rename.gdsn | 0.004 | 0.001 | 0.004 | |
| setdim.gdsn | 0.006 | 0.004 | 0.009 | |
| showfile.gds | 0.003 | 0.000 | 0.003 | |
| summarize.gdsn | 0.001 | 0.000 | 0.001 | |
| sync.gds | 0.003 | 0.000 | 0.003 | |
| system.gds | 0.005 | 0.000 | 0.005 | |
| unload.gdsn | 0.004 | 0.000 | 0.003 | |
| write.gdsn | 0.002 | 0.000 | 0.001 | |