| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:33 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the gaia package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaia.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 731/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
S. Morganella
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: gaia |
| Version: 2.42.0 |
| Command: chmod a+r gaia -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gaia |
| StartedAt: 2023-04-10 18:50:24 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 18:50:33 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 8.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r gaia -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gaia
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* checking for file 'gaia/DESCRIPTION' ... OK
* preparing 'gaia':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'gaia.Rnw' using Sweave
Warning: Package 'gaia' is deprecated and will be removed from Bioconductor
version 3.17
Loading Marker Informations
........................
Done
Loading Copy Number Data
........................................................................
Done
Performing Data Preprocessing
Homogeneous cannot be applied on the data (data must contain exactly two different kinds of aberrations)
Done
Computing Probability Distribution
................................................................................................................................................
Done
Assessing the Significance of Observed Data
........................................................................
Done
Running Standard peel-off Algorithm With Significance Threshold of 0.25
........................................................................
Done
Writing Output File 'CompleteResults.txt' Containing the Significant Regions
File 'CompleteResults.txt' Saved
Performing Data Preprocessing
Error: processing vignette 'gaia.Rnw' failed with diagnostics:
chunk 8 (label = runGAIA_notDefault)
Error in if (chromosomes == -1) { : the condition has length > 1
--- failed re-building 'gaia.Rnw'
SUMMARY: processing the following file failed:
'gaia.Rnw'
Error: Vignette re-building failed.
Execution halted