Yongchao Ge
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/flowPeaks |
| git_branch: RELEASE_3_16 |
| git_last_commit: e7a4e64 |
| git_last_commit_date: 2022-11-01 11:07:04 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:33 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the flowPeaks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 701/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowPeaks 1.44.0 (landing page) Yongchao Ge
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: flowPeaks |
| Version: 1.44.0 |
| Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir flowPeaks_1.44.0.tar.gz |
| StartedAt: 2023-04-11 08:00:32 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:01:09 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 37.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: flowPeaks_1.44.0.zip |
| PackageFileSize: 2.071 MiB |
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### Running command:
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### rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir flowPeaks_1.44.0.tar.gz
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* installing *source* package 'flowPeaks' ...
** using staged installation
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"F:/biocbuild/bbs-3.16-bioc/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 2.4
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
141 | if(levels.size()<(i+1)){
| ~~~~~~~~~~~~~^~~~~~
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rregistrate.cpp -o Rregistrate.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
803 | if(!triangulate & plot & !debug)
| ^~~~~~~~~~~~
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowPeaks.cpp -o flowPeaks.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect.cpp -o func_collect.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect_supp.cpp -o func_collect_supp.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gvector_gmatrix.cpp -o gvector_gmatrix.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kd_tree.cpp -o kd_tree.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmns.cpp -o kmns.o
g++ -std=gnu++14 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/flowPeaks.buildbin-libdir/00LOCK-flowPeaks/00new/flowPeaks/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.44.0.zip
* DONE (flowPeaks)