Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:02 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the chipenrich package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chipenrich.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 311/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
chipenrich 2.22.0 (landing page) Raymond G. Cavalcante
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: chipenrich |
Version: 2.22.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:chipenrich.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings chipenrich_2.22.0.tar.gz |
StartedAt: 2023-04-10 19:20:54 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 19:27:50 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 415.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: chipenrich.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:chipenrich.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings chipenrich_2.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/chipenrich.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘chipenrich/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘chipenrich’ version ‘2.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘chipenrich’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed broadenrich 5.906 0.499 6.443 polyenrich 5.209 0.521 5.749 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
chipenrich.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chipenrich ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘chipenrich’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chipenrich)
chipenrich.Rcheck/tests/testthat.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(chipenrich) > > test_check("chipenrich") [ FAIL 0 | WARN 0 | SKIP 3 | PASS 170 ] ══ Skipped tests ═══════════════════════════════════════════════════════════════ • empty test (3) [ FAIL 0 | WARN 0 | SKIP 3 | PASS 170 ] > > proc.time() user system elapsed 144.229 12.783 157.877
chipenrich.Rcheck/chipenrich-Ex.timings
name | user | system | elapsed | |
assign_peak_segments | 1.059 | 0.009 | 1.072 | |
assign_peaks | 0.399 | 0.015 | 0.414 | |
broadenrich | 5.906 | 0.499 | 6.443 | |
calc_peak_gene_overlap | 0.263 | 0.013 | 0.275 | |
chipenrich | 2.142 | 0.094 | 2.243 | |
load_peaks | 0.052 | 0.001 | 0.053 | |
num_peaks_per_gene | 0.450 | 0.011 | 0.462 | |
peaks2genes | 0.436 | 0.013 | 0.450 | |
plot_chipenrich_spline | 1.261 | 0.106 | 1.372 | |
plot_dist_to_tss | 0.306 | 0.004 | 0.312 | |
plot_gene_coverage | 0.700 | 0.029 | 0.731 | |
plot_polyenrich_spline | 2.219 | 0.210 | 2.447 | |
polyenrich | 5.209 | 0.521 | 5.749 | |
proxReg | 0.349 | 0.004 | 0.353 | |
read_bed | 0.229 | 0.004 | 0.236 | |
supported_genesets | 0.005 | 0.001 | 0.005 | |
supported_genomes | 0.002 | 0.001 | 0.002 | |
supported_locusdefs | 0.005 | 0.002 | 0.006 | |
supported_methods | 0.001 | 0.000 | 0.001 | |
supported_read_lengths | 0.006 | 0.002 | 0.007 | |