Back to Multiple platform build/check report for BioC 3.16:   simplified   long
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This page was generated on 2023-04-12 11:05:26 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbChebi on palomino4


To the developers/maintainers of the biodbChebi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 180/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.4.0  (landing page)
Pierrick Roger
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_16
git_last_commit: 4525e08
git_last_commit_date: 2022-11-01 11:25:43 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodbChebi
Version: 1.4.0
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings biodbChebi_1.4.0.tar.gz
StartedAt: 2023-04-10 23:20:17 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 23:21:59 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 102.4 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings biodbChebi_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/biodbChebi.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ChebiConn  3.3   1.44    5.64
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'biodbChebi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2023-04-10 23:21:20.718][biodb::testContext]
biodb.INFO [2023-04-10 23:21:20.721][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:20.723][biodb::testContext] Test context - Generic tests
biodb.INFO [2023-04-10 23:21:20.724][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:20.725][biodb::testContext]
biodb.INFO [2023-04-10 23:21:20.733][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:20.736][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:20.745][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:20.747][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-10 23:21:20.749][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-10 23:21:20.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.755][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-10 23:21:20.778][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-10 23:21:20.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.786][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-10 23:21:20.788][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-10 23:21:20.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.794][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-10 23:21:20.795][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-10 23:21:20.797][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-10 23:21:20.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.803][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-10 23:21:20.804][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-10 23:21:20.806][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-10 23:21:20.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.811][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-10 23:21:20.813][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-10 23:21:20.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.819][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-10 23:21:20.820][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-10 23:21:20.822][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-10 23:21:20.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.827][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-10 23:21:20.828][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-10 23:21:20.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.833][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-10 23:21:20.835][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-10 23:21:20.836][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-10 23:21:20.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.841][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:20.843][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-10 23:21:20.844][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-10 23:21:20.846][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-10 23:21:20.847][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-10 23:21:20.849][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-10 23:21:20.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.854][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-10 23:21:20.855][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-10 23:21:20.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.861][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-10 23:21:20.863][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-10 23:21:20.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.868][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-10 23:21:20.870][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-10 23:21:20.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.875][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-10 23:21:20.877][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-10 23:21:20.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.883][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-10 23:21:20.884][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-10 23:21:20.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.889][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:20.891][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-10 23:21:20.895][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-10 23:21:20.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.900][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-10 23:21:20.901][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-10 23:21:20.903][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-10 23:21:20.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:20.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:20.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:20.914][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-10 23:21:20.961][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:20.975][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-10 23:21:20.976][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:20.978][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:20.979][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:20.980][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:20.981][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:20.982][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:20.984][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:20.985][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:20.987][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:20.988][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-10 23:21:20.989][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:20.991][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:20.992][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:20.993][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:20.993][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:20.993][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:20.993][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:20.993][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:20.995][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:20.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:20.997][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:20.999][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:21.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.002][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.004][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.005][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:21.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:21.007][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.009][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.010][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-10 23:21:21.012][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.014][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:21.015][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.017][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:21.019][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.021][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.023][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.025][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.027][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:21.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:21.029][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.031][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-10 23:21:21.032][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:21.034][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.035][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.036][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:21.036][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:21.036][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:21.036][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:21.036][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:21.038][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:21.039][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.040][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.041][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:21.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.045][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.046][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.047][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:21.049][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:21.050][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.051][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.053][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-10 23:21:21.055][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.057][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-10 23:21:21.058][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.059][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:21.060][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.061][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.063][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.065][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.067][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:21.069][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:21.071][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.072][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-10 23:21:21.074][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:21.076][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.078][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.080][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.082][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:21.084][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.086][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.088][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:21.090][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.092][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.093][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.095][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.097][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:21.099][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:21.101][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.103][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.105][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-10 23:21:21.108][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.110][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:21.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.114][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:21.115][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.117][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.119][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.121][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.123][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:21.125][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:21.127][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.129][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-10 23:21:21.131][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:21.132][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.134][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.136][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.138][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:21.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.143][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:21.145][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.147][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.149][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.151][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.153][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:21.154][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:21.156][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.158][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:21.163][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:21.165][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.290][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-10 23:21:21.295][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-10 23:21:21.296][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-10 23:21:21.298][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-10 23:21:21.300][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:21.301][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-10 23:21:21.303][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:21.305][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:21.307][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-10 23:21:21.314][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-10 23:21:21.316][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:21.317][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-10 23:21:21.319][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:21.321][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:21.322][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-10 23:21:21.324][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-10 23:21:21.325][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-10 23:21:21.327][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-10 23:21:21.328][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:21.330][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-10 23:21:21.332][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-10 23:21:21.333][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-10 23:21:21.335][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-10 23:21:21.336][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-10 23:21:21.338][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-10 23:21:21.339][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-10 23:21:21.341][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-10 23:21:21.342][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-10 23:21:21.344][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-10 23:21:21.346][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-10 23:21:21.347][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-10 23:21:21.349][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-10 23:21:21.350][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-10 23:21:21.352][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-10 23:21:21.353][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-10 23:21:21.355][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-10 23:21:21.357][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-10 23:21:21.358][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-10 23:21:21.360][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-10 23:21:21.361][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-10 23:21:21.363][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-10 23:21:21.365][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-10 23:21:21.366][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-10 23:21:21.368][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-10 23:21:21.369][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-10 23:21:21.371][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-10 23:21:21.372][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-10 23:21:21.374][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-10 23:21:21.376][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-10 23:21:21.379][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-10 23:21:21.381][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-10 23:21:21.384][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-10 23:21:21.387][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-10 23:21:21.389][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-10 23:21:21.392][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-10 23:21:21.394][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-10 23:21:21.397][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-10 23:21:21.399][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-10 23:21:21.402][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-10 23:21:21.404][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-10 23:21:21.406][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-10 23:21:21.409][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-10 23:21:21.411][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-10 23:21:21.413][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-10 23:21:21.416][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-10 23:21:21.418][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-10 23:21:21.421][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:21.423][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:21.425][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-10 23:21:21.428][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-10 23:21:21.430][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-10 23:21:21.433][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-10 23:21:21.435][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-10 23:21:21.437][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-10 23:21:21.440][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-10 23:21:21.442][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-10 23:21:21.445][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-10 23:21:21.447][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-10 23:21:21.449][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-10 23:21:21.452][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-10 23:21:21.454][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-10 23:21:21.457][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-10 23:21:21.459][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-10 23:21:21.496][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-10 23:21:21.500][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:21.505][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:21.507][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.511][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:21.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:21.726][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:21.741][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-04-10 23:21:21.744][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.746][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.748][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.750][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:21.752][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.755][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.757][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-04-10 23:21:21.759][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-10 23:21:21.761][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:21.762][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.764][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-04-10 23:21:21.766][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-04-10 23:21:21.768][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-04-10 23:21:21.770][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:21.772][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:21.772][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:21.772][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:21.773][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-10 23:21:21.775][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.777][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.779][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:21.780][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:21.782][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:21.784][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:21.785][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-04-10 23:21:21.785][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-04-10 23:21:21.787][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:21.789][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:21.791][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:21.792][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-04-10 23:21:21.792][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-04-10 23:21:21.801][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:21.804][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:21.807][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-04-10 23:21:21.809][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:21.812][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:21.815][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:21.851][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-04-10 23:21:21.853][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-04-10 23:21:21.859][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-04-10 23:21:21.866][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-04-10 23:21:21.872][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:21.874][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:21.877][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-04-10 23:21:21.879][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-04-10 23:21:21.892][biodb::testThat]
biodb.INFO [2023-04-10 23:21:21.894][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-10 23:21:21.896][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:21.898][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:21.905][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.16-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2023-04-10 23:21:21.909][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:21.914][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:21.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:21.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:21.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:21.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:21.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:21.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:21.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:21.975][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:21.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:21.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:21.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:21.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:21.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:21.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:21.999][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.003][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.050][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.072][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.089][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.098][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.099][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.101][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.108][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:22.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.112][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.146][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.153][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:22.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:22.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:22.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.163][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:22.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.167][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:22.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:22.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:22.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.178][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:22.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:22.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:22.260][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2023-04-10 23:21:22.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.328][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-10 23:21:22.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-10 23:21:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.335][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-10 23:21:22.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-10 23:21:22.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-10 23:21:22.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-10 23:21:22.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.350][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-10 23:21:22.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-10 23:21:22.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.512][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.516][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.550][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:22.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:22.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:22.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.580][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:22.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:22.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.584][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:22.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:22.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.614][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.618][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.651][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.655][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:22.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.696][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.727][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.729][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.731][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.762][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.763][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.766][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.767][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:22.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.796][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:22.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:22.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:22.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:22.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:22.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:22.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:22.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.837][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.870][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.873][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:22.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.907][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.923][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:22.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:22.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.927][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.937][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:22.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:22.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.951][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.963][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:22.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:22.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.970][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:22.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:22.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:22.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:22.988][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:23.022][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.026][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.045][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.060][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.065][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-04-10 23:21:23.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:23.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.084][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.097][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:23.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:23.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.122][ef$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:23.137][biodb::testThat]
biodb.INFO [2023-04-10 23:21:23.139][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-10 23:21:23.141][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:23.143][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:23.166][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2023-04-10 23:21:23.177][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:23.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2023-04-10 23:21:23.188][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:23.192][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2023-04-10 23:21:23.194][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:23.230][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:23.233][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:23.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:23.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:23.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:23.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:23.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:23.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:23.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:23.255][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.259][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.287][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:23.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:23.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.291][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.299][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:23.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:23.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:23.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:23.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.324][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.337][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:23.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:23.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.349][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:23.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.357][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:23.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.361][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:23.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.371][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.373][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.382][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.387][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.396][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:23.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:23.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.402][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:23.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:23.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.411][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:23.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:23.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:23.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:23.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:23.469][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2023-04-10 23:21:23.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-10 23:21:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-10 23:21:23.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-10 23:21:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-10 23:21:23.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-10 23:21:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-10 23:21:23.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:23.495][biodb::testThat]
biodb.INFO [2023-04-10 23:21:23.497][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-10 23:21:23.498][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:23.499][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:23.503][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.506][ef$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:23.508][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2023-04-10 23:21:23.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:23.557][function(conn, opt)] With value "squalene".
biodb.DEBUG[2023-04-10 23:21:23.563][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-04-10 23:21:23.590][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:23.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-04-10 23:21:23.606][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:23.608][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-04-10 23:21:23.631][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:23.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:23.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:23.643][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:23.656][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-04-10 23:21:23.659][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2023-04-10 23:21:23.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:23.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.684][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.689][ef$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:23.692][biodb::testThat]
biodb.INFO [2023-04-10 23:21:23.693][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-10 23:21:23.695][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:23.696][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:23.801][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:23.806][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:23.807][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:23.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:23.811][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2023-04-10 23:21:23.833][biodb::testThat]
biodb.INFO [2023-04-10 23:21:23.834][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-10 23:21:23.835][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:23.837][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:23.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:23.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:23.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:23.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-10 23:21:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-10 23:21:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-10 23:21:23.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-10 23:21:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:23.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:23.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:23.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-10 23:21:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.975][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-10 23:21:23.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-10 23:21:23.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:23.980][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-10 23:21:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-10 23:21:23.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:23.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:23.990][biodb::testThat]
biodb.INFO [2023-04-10 23:21:23.991][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-10 23:21:23.993][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:23.994][biodb::testThat]
biodb.INFO [2023-04-10 23:21:24.001][biodb::testThat]
biodb.INFO [2023-04-10 23:21:24.002][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-10 23:21:24.003][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:24.004][biodb::testThat]
biodb.INFO [2023-04-10 23:21:24.011][biodb::testThat]
biodb.INFO [2023-04-10 23:21:24.013][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-10 23:21:24.014][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:24.015][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:24.020][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2023-04-10 23:21:24.678][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2023-04-10 23:21:25.517][biodb::testThat]
biodb.INFO [2023-04-10 23:21:25.518][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-10 23:21:25.520][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:25.521][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:25.916][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2023-04-10 23:21:26.299][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:26.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:26.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:26.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:26.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.308][ef$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:26.310][biodb::testThat]
biodb.INFO [2023-04-10 23:21:26.312][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2023-04-10 23:21:26.313][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:26.314][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:26.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:26.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:26.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:26.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:26.441][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:26.445][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:26.446][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:26.448][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:26.450][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-04-10 23:21:26.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:26.518][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:26.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:26.522][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:26.524][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2023-04-10 23:21:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-10 23:21:26.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-10 23:21:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:26.604][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:26.608][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:26.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-04-10 23:21:26.612][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:26.622][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-04-10 23:21:26.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:26.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:26.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:26.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:26.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:26.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:26.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:26.644][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2023-04-10 23:21:26.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:26.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2023-04-10 23:21:26.692][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:26.708][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2023-04-10 23:21:26.710][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:26.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:26.713][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:26.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:26.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:26.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:26.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:26.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:26.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:26.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:26.731][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.742][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:26.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:26.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:26.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.752][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:26.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:26.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.756][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:26.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:26.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:26.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.766][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:26.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:26.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.783][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:26.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:26.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.795][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:26.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:26.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:26.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.818][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:26.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:26.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.824][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:26.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.834][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:26.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:26.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:26.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:26.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:26.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.848][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:26.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:26.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:26.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:26.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:26.917][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2023-04-10 23:21:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:26.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:26.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:26.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:26.945][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:26.951][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:26.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-04-10 23:21:26.957][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:26.970][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-04-10 23:21:26.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:26.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:26.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:26.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:26.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.021][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:27.025][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:27.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-04-10 23:21:27.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:27.040][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-04-10 23:21:27.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:27.080][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:27.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:27.086][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:27.090][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-04-10 23:21:27.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:27.168][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2023-04-10 23:21:27.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:27.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2023-04-10 23:21:27.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:27.191][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2023-04-10 23:21:27.194][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:27.197][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:27.199][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:27.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:27.230][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.236][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.245][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:27.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:27.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.250][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.252][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:27.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:27.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.257][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:27.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:27.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.265][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:27.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:27.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.272][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:27.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:27.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.280][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.283][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:27.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.288][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:27.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:27.295][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.297][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.299][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:27.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:27.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.305][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.326][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:27.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:27.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.332][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:27.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:27.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:27.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:27.345][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.346][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.416][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2023-04-10 23:21:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:27.469][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2023-04-10 23:21:27.471][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:27.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2023-04-10 23:21:27.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:27.486][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2023-04-10 23:21:27.488][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:27.490][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:27.491][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:27.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:27.510][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.514][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.521][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:27.522][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:27.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.524][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.526][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:27.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:27.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.530][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:27.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:27.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.535][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:27.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:27.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.540][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:27.543][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:27.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.545][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.547][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:27.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.551][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:27.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:27.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.556][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.558][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:27.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:27.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.568][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:27.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:27.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.578][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:27.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:27.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.590][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.642][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2023-04-10 23:21:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:27.684][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2023-04-10 23:21:27.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:27.687][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2023-04-10 23:21:27.690][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:27.702][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2023-04-10 23:21:27.705][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:27.707][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:27.708][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:27.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:27.729][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.733][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.741][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:27.742][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:27.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.746][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:27.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:27.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.751][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:27.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:27.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.759][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:27.763][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:27.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.767][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.770][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:27.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:27.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.781][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.784][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:27.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.794][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:27.799][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:27.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.803][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.805][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:27.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:27.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:27.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.822][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:27.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:27.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.829][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:27.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:27.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:27.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.854][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:27.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:27.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.923][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2023-04-10 23:21:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:27.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:27.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:27.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:27.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:27.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:27.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:27.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:27.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:27.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:27.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:27.972][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2023-04-10 23:21:27.974][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:27.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2023-04-10 23:21:27.980][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:27.995][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2023-04-10 23:21:27.998][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:28.001][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:28.003][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:28.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:28.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:28.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:28.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:28.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:28.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:28.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:28.032][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.038][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.048][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:28.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:28.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.054][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:28.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.064][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:28.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:28.068][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.070][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:28.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:28.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:28.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:28.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:28.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.101][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.113][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.117][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.127][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:28.129][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.152][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.158][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.168][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:28.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:28.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.174][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.184][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:28.186][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:28.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.190][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:28.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:28.202][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:28.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.206][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:28.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:28.295][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2023-04-10 23:21:28.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:28.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:28.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:28.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:28.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:28.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:28.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:28.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:28.330][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2023-04-10 23:21:28.332][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:28.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2023-04-10 23:21:28.335][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:28.349][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2023-04-10 23:21:28.352][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:28.353][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:28.355][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:28.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:28.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:28.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:28.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:28.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:28.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:28.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:28.374][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.379][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.386][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:28.387][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:28.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.389][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:28.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.396][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:28.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:28.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:28.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:28.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.413][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:28.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.430][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.441][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.443][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.445][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.450][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:28.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.454][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.465][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.477][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:28.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:28.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.482][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.489][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:28.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:28.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.493][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:28.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:28.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:28.592][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2023-04-10 23:21:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:28.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:28.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:28.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:28.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:28.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:28.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:28.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:28.643][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2023-04-10 23:21:28.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:28.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2023-04-10 23:21:28.650][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:28.662][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2023-04-10 23:21:28.664][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:28.666][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:28.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:28.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:28.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:28.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:28.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:28.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:28.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:28.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:28.692][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.696][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.708][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:28.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:28.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:28.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.720][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:28.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:28.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.724][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:28.732][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:28.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:28.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.743][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.749][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.757][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.759][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:28.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.761][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.763][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:28.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.767][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.769][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.790][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:28.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:28.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.794][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.802][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:28.804][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:28.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:28.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:28.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:28.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:28.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:28.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:28.888][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2023-04-10 23:21:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:28.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:28.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:28.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:28.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:28.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:28.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:28.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:28.927][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2023-04-10 23:21:28.929][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:28.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2023-04-10 23:21:28.933][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:28.945][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2023-04-10 23:21:28.947][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:28.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:28.960][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:28.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:28.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:28.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:28.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:28.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:28.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:28.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:28.990][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:28.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:28.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:28.996][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:28.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.006][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:29.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:29.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.012][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.021][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:29.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:29.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.027][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:29.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:29.039][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:29.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.043][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:29.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.059][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:29.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:29.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.074][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.076][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:29.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.082][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:29.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.105][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:29.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:29.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.110][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:29.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.121][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:29.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:29.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.127][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:29.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:29.139][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:29.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.143][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:29.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:29.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:29.230][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2023-04-10 23:21:29.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:29.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:29.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:29.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:29.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:29.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:29.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:29.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:29.289][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2023-04-10 23:21:29.291][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:29.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2023-04-10 23:21:29.297][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:29.312][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2023-04-10 23:21:29.315][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:29.317][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:29.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:29.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:29.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:29.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:29.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:29.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:29.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:29.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:29.351][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.369][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:29.371][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:29.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.375][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:29.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.386][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:29.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:29.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.392][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:29.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:29.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:29.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.409][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:29.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.424][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:29.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:29.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.441][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.443][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:29.445][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.449][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.461][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.465][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.476][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:29.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:29.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.481][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.491][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:29.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:29.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.495][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.496][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:29.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:29.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:29.592][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2023-04-10 23:21:29.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:29.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:29.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:29.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:29.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:29.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:29.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:29.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:29.641][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2023-04-10 23:21:29.643][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:29.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2023-04-10 23:21:29.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:29.662][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2023-04-10 23:21:29.663][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:29.665][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:29.667][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:29.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:29.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:29.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:29.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:29.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:29.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:29.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:29.695][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.701][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.711][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:29.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:29.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:29.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:29.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.728][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:29.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:29.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.734][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:29.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:29.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:29.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:29.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.758][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:29.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.766][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:29.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:29.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.772][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:29.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.774][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.775][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.777][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:29.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.786][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.787][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.796][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:29.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:29.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.809][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:29.811][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:29.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.814][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:29.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:29.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:29.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:29.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:29.936][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2023-04-10 23:21:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:29.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:29.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:29.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:29.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:29.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:29.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:29.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:29.969][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2023-04-10 23:21:29.971][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:29.973][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2023-04-10 23:21:29.975][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:30.000][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2023-04-10 23:21:30.003][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:30.005][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:30.008][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:30.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:30.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:30.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:30.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:30.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:30.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:30.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:30.037][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.043][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.054][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.059][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.067][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:30.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:30.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.081][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:30.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.098][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.099][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.104][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.107][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.127][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:30.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:30.154][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:30.237][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2023-04-10 23:21:30.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:30.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:30.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:30.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:30.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:30.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:30.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:30.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:30.274][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2023-04-10 23:21:30.276][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:30.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2023-04-10 23:21:30.281][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:30.293][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2023-04-10 23:21:30.294][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:30.296][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:30.298][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:30.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:30.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:30.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:30.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:30.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:30.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:30.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:30.317][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.321][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.327][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.329][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.333][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.342][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.345][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.346][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:30.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:30.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.358][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.360][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.364][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.369][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.370][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.374][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.376][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.385][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.391][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.395][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.402][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.403][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.405][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:30.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:30.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.423][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:30.477][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2023-04-10 23:21:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:30.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:30.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:30.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:30.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:30.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:30.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:30.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:30.512][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2023-04-10 23:21:30.514][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:30.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2023-04-10 23:21:30.517][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:30.528][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2023-04-10 23:21:30.529][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:30.531][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:30.533][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:30.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:30.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:30.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:30.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:30.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:30.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:30.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:30.552][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.556][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.563][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.567][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.574][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.578][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:30.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:30.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.589][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.594][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.600][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.601][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.605][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.623][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.627][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.641][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.644][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:30.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:30.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.655][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:30.711][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2023-04-10 23:21:30.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:30.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:30.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:30.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:30.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:30.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:30.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:30.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:30.761][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2023-04-10 23:21:30.763][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:30.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2023-04-10 23:21:30.768][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:30.780][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2023-04-10 23:21:30.782][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:30.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:30.786][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:30.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:30.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:30.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:30.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:30.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:30.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:30.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:30.806][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.819][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.823][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.831][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:30.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:30.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.846][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.857][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:30.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.870][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.873][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.877][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.889][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.905][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.911][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:30.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.925][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.928][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.932][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:30.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:30.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:30.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:30.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.950][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:30.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:30.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:30.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.013][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2023-04-10 23:21:31.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:31.045][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2023-04-10 23:21:31.046][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:31.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2023-04-10 23:21:31.050][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:31.064][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2023-04-10 23:21:31.066][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:31.067][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:31.069][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:31.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:31.087][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.098][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.099][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.109][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.113][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.125][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.136][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.151][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.152][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.155][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.156][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.160][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.171][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.177][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:31.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:31.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.181][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.189][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:31.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:31.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:31.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:31.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.267][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2023-04-10 23:21:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:31.297][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2023-04-10 23:21:31.298][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:31.300][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2023-04-10 23:21:31.302][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:31.311][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2023-04-10 23:21:31.313][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:31.315][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:31.317][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:31.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:31.334][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.338][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.344][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.346][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.348][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.355][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.381][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.389][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.394][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.406][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.408][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.418][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.422][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.429][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:31.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:31.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.439][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:31.441][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:31.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:31.457][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:31.459][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.461][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.550][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2023-04-10 23:21:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:31.590][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2023-04-10 23:21:31.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:31.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2023-04-10 23:21:31.596][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:31.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2023-04-10 23:21:31.611][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:31.613][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:31.615][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:31.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:31.637][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.658][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.660][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.663][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.671][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.675][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.688][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.701][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.709][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.715][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.720][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.733][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.741][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:31.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:31.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:31.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.754][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:31.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:31.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.758][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:31.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:31.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.771][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:31.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.841][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2023-04-10 23:21:31.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:31.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:31.875][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2023-04-10 23:21:31.876][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:31.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2023-04-10 23:21:31.879][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:31.889][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2023-04-10 23:21:31.891][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:31.898][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:31.900][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:31.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:31.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:31.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:31.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:31.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:31.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:31.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:31.918][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.921][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.928][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.932][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:31.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.938][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.940][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.952][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:31.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.963][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:31.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.973][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.974][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.988][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:31.995][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:31.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:31.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:31.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.005][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:32.007][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:32.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.009][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:32.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:32.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.019][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:32.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:32.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:32.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:32.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:32.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:32.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:32.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:32.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:32.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.077][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2023-04-10 23:21:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.129][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:32.133][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:32.134][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:32.136][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:32.138][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-04-10 23:21:32.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:32.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:32.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:32.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:32.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:32.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:32.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:32.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:33.036][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:33.039][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2023-04-10 23:21:33.041][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:33.045][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2023-04-10 23:21:33.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:33.053][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:33.055][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2023-04-10 23:21:33.057][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:33.068][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2023-04-10 23:21:33.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:33.087][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2023-04-10 23:21:33.088][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:33.090][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2023-04-10 23:21:33.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:33.103][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2023-04-10 23:21:33.105][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:33.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:33.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:33.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.127][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.138][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:33.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:33.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.141][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.148][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:33.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:33.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.152][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:33.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:33.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.170][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.185][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:33.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:33.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.201][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.212][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:33.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:33.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.217][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.227][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.234][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:33.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:33.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.238][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.248][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:33.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:33.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.252][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:33.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:33.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.259][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:33.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:33.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.263][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:33.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.340][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2023-04-10 23:21:33.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:33.412][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2023-04-10 23:21:33.413][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:33.415][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2023-04-10 23:21:33.417][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:33.430][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2023-04-10 23:21:33.432][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:33.433][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:33.435][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:33.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.456][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.460][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.466][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:33.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:33.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.470][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.477][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:33.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:33.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.481][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:33.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:33.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.492][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:33.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:33.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:33.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.513][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.514][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:33.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:33.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.529][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.536][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:33.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:33.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.540][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:33.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:33.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.547][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:33.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:33.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.552][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:33.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.559][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:33.560][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:33.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.563][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:33.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.642][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2023-04-10 23:21:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:33.704][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:33.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:33.708][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:33.710][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-04-10 23:21:33.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:33.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:33.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:33.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:33.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:33.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:33.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:33.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:33.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:34.427][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:34.429][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-04-10 23:21:34.431][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:34.433][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-04-10 23:21:34.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:34.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:34.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:34.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:34.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:34.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:34.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:34.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:34.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:34.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.129][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:35.145][biodb::testThat]
biodb.INFO [2023-04-10 23:21:35.147][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-04-10 23:21:35.148][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:35.149][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-10 23:21:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-10 23:21:35.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:35.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:35.204][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:35.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-04-10 23:21:35.208][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:35.210][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-04-10 23:21:35.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.252][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:35.255][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:35.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-04-10 23:21:35.258][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:35.260][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-04-10 23:21:35.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.303][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:35.306][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:35.308][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-04-10 23:21:35.309][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:35.311][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-04-10 23:21:35.315][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-10 23:21:35.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.343][private$selectFields]
biodb.TRACE[2023-04-10 23:21:35.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:35.346][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:35.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.352][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.356][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.359][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.364][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.365][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-04-10 23:21:35.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.422][private$selectFields]
biodb.TRACE[2023-04-10 23:21:35.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:35.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:35.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.431][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.436][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.439][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.443][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.445][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-04-10 23:21:35.462][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-04-10 23:21:35.464][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-10 23:21:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:35.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:35.577][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:35.579][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-04-10 23:21:35.582][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:35.586][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-04-10 23:21:35.592][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:35.599][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:35.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-04-10 23:21:35.604][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:35.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-04-10 23:21:35.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:35.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:35.737][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-10 23:21:35.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.788][private$selectFields]
biodb.TRACE[2023-04-10 23:21:35.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:35.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:35.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.807][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.812][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.813][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:35.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-04-10 23:21:35.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.892][private$selectFields]
biodb.TRACE[2023-04-10 23:21:35.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:35.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:35.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.905][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.924][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.925][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-04-10 23:21:35.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:35.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:35.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:35.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:35.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:35.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:35.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:35.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:35.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.986][private$selectFields]
biodb.TRACE[2023-04-10 23:21:35.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:35.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:35.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:35.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:35.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:35.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.011][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.019][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.021][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-04-10 23:21:36.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-10 23:21:36.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-10 23:21:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:36.089][biodb::testThat]
biodb.INFO [2023-04-10 23:21:36.091][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-04-10 23:21:36.093][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:36.095][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-10 23:21:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-10 23:21:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:36.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:36.174][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:36.181][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:36.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-04-10 23:21:36.186][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:36.189][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-04-10 23:21:36.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:36.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:36.249][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:36.251][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-04-10 23:21:36.254][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:36.257][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-04-10 23:21:36.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:36.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:36.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:36.313][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:36.315][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-04-10 23:21:36.317][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:36.321][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-04-10 23:21:36.325][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-10 23:21:36.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.367][private$selectFields]
biodb.TRACE[2023-04-10 23:21:36.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:36.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:36.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.380][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.399][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.403][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.411][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.412][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-04-10 23:21:36.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.471][private$selectFields]
biodb.TRACE[2023-04-10 23:21:36.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:36.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:36.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.479][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.484][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.492][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.493][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-04-10 23:21:36.511][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-04-10 23:21:36.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-10 23:21:36.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:36.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:36.574][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:36.578][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:36.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-04-10 23:21:36.582][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:36.585][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-04-10 23:21:36.591][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:36.596][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:36.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-04-10 23:21:36.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:36.604][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-04-10 23:21:36.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:36.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:36.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:36.747][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-10 23:21:36.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.775][private$selectFields]
biodb.TRACE[2023-04-10 23:21:36.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:36.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:36.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.785][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.790][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.792][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.796][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.798][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.799][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:36.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-04-10 23:21:36.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.845][private$selectFields]
biodb.TRACE[2023-04-10 23:21:36.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:36.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:36.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.856][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.861][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-04-10 23:21:36.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:36.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:36.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:36.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:36.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:36.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:36.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.930][private$selectFields]
biodb.TRACE[2023-04-10 23:21:36.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:36.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:36.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.943][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.946][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:36.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.950][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.951][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.952][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:36.968][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-04-10 23:21:36.970][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-10 23:21:36.971][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-10 23:21:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:36.987][biodb::testThat]
biodb.INFO [2023-04-10 23:21:36.989][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-04-10 23:21:36.990][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:36.991][biodb::testThat]
biodb.TRACE[2023-04-10 23:21:36.995][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-10 23:21:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-10 23:21:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:36.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:37.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:37.041][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:37.045][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:37.046][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-04-10 23:21:37.048][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:37.050][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-04-10 23:21:37.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:37.084][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:37.088][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:37.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-04-10 23:21:37.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:37.093][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-04-10 23:21:37.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:37.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:37.136][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:37.140][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:37.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-04-10 23:21:37.143][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:37.145][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-04-10 23:21:37.148][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-10 23:21:37.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.176][private$selectFields]
biodb.TRACE[2023-04-10 23:21:37.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:37.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:37.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.184][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.189][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.191][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.196][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.197][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-04-10 23:21:37.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.242][private$selectFields]
biodb.TRACE[2023-04-10 23:21:37.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:37.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:37.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.250][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.255][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.257][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.262][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.263][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-04-10 23:21:37.281][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-04-10 23:21:37.282][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-10 23:21:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:37.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:37.359][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:37.362][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:37.364][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-04-10 23:21:37.366][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:37.368][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-04-10 23:21:37.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:37.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:37.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-04-10 23:21:37.378][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:37.380][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-04-10 23:21:37.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:37.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:37.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:37.475][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-10 23:21:37.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.527][private$selectFields]
biodb.TRACE[2023-04-10 23:21:37.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:37.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:37.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.542][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.545][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.551][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.552][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-04-10 23:21:37.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.599][private$selectFields]
biodb.TRACE[2023-04-10 23:21:37.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:37.601][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:37.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.608][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.613][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.615][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.621][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.623][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.643][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-04-10 23:21:37.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.672][private$selectFields]
biodb.TRACE[2023-04-10 23:21:37.673][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-10 23:21:37.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-10 23:21:37.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.680][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.685][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.688][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-04-10 23:21:37.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.693][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.694][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-04-10 23:21:37.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:37.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:37.711][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-04-10 23:21:37.713][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-10 23:21:37.714][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-10 23:21:37.749][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:37.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-10 23:21:37.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:37.759][biodb::testThat]
biodb.INFO [2023-04-10 23:21:37.761][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2023-04-10 23:21:37.763][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:37.765][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:37.769][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2023-04-10 23:21:37.772][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:37.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2023-04-10 23:21:37.777][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-10 23:21:37.780][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-10 23:21:37.782][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:37.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-04-10 23:21:37.786][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-10 23:21:37.788][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-10 23:21:37.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:37.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:37.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:37.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:37.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:37.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:37.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:37.811][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2023-04-10 23:21:37.814][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-10 23:21:37.815][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-10 23:21:37.817][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2023-04-10 23:21:38.685][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2023-04-10 23:21:39.051][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-10 23:21:39.056][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2023-04-10 23:21:39.079][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2023-04-10 23:21:39.085][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2023-04-10 23:21:39.088][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-10 23:21:39.091][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:39.093][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:39.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:39.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:39.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:39.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:39.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:39.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:39.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:39.120][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.125][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.135][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:39.137][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:39.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.141][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.143][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:39.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:39.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:39.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:39.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:39.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:39.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.164][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:39.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.172][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.174][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:39.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:39.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:39.184][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:39.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.188][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.190][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:39.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.195][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:39.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:39.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.204][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:39.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:39.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:39.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:39.292][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2023-04-10 23:21:39.293][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2023-04-10 23:21:39.302][biodb::testThat]
biodb.INFO [2023-04-10 23:21:39.303][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2023-04-10 23:21:39.304][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:39.306][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:39.319][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2023-04-10 23:21:39.321][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2023-04-10 23:21:39.323][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-10 23:21:39.326][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2023-04-10 23:21:39.329][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2023-04-10 23:21:39.350][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2023-04-10 23:21:39.353][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:39.355][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-04-10 23:21:39.357][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-10 23:21:39.359][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-10 23:21:39.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:39.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:39.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:39.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:39.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:39.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:39.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:39.409][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2023-04-10 23:21:39.425][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-10 23:21:39.426][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-10 23:21:39.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2023-04-10 23:21:39.867][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2023-04-10 23:21:40.226][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-10 23:21:40.231][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2023-04-10 23:21:40.237][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.TRACE[2023-04-10 23:21:40.243][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml"
biodb.DEBUG[2023-04-10 23:21:40.246][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-10 23:21:40.248][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2023-04-10 23:21:40.250][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:40.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:40.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:40.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:40.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:40.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:40.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:40.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:40.288][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.290][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.293][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.303][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:40.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:40.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.308][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.310][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:40.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:40.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:40.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:40.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.323][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.330][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.331][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.333][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.335][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.337][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:40.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:40.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.349][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.351][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:40.352][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:40.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.354][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.356][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:40.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:40.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.360][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:40.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:40.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.366][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:40.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:40.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:40.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:40.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:40.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:40.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:40.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:40.421][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.424][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.431][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:40.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:40.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.435][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:40.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:40.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.442][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:40.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:40.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.446][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:40.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:40.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:40.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.457][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:40.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.468][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.475][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.476][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.479][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.492][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:40.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:40.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.498][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:40.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.511][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.522][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:40.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:40.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.525][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:40.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.533][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:40.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:40.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.545][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:40.547][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:40.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.550][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:40.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:40.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:40.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:40.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:40.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:40.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:40.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:40.620][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.626][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.634][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:40.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:40.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.637][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.645][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:40.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:40.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.648][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:40.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:40.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.661][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.672][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.683][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.690][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:40.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:40.693][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.694][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.719][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:40.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:40.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.724][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:40.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:40.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.731][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:40.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:40.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:40.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:40.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.746][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:40.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:40.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:40.836][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2023-04-10 23:21:40.838][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2023-04-10 23:21:40.839][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2023-04-10 23:21:40.857][biodb::testThat]
biodb.INFO [2023-04-10 23:21:40.858][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2023-04-10 23:21:40.859][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:40.861][biodb::testThat]
biodb.INFO [2023-04-10 23:21:40.888][biodb::testThat]
biodb.INFO [2023-04-10 23:21:40.889][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2023-04-10 23:21:40.891][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:40.892][biodb::testThat]
biodb.INFO [2023-04-10 23:21:40.907][biodb::testThat]
biodb.INFO [2023-04-10 23:21:40.909][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2023-04-10 23:21:40.911][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:40.913][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:40.918][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:40.929][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-10 23:21:40.931][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-10 23:21:40.934][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2023-04-10 23:21:41.348][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2023-04-10 23:21:41.849][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-10 23:21:41.853][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content"
biodb.TRACE[2023-04-10 23:21:41.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.request"
biodb.TRACE[2023-04-10 23:21:41.882][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:41.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:41.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:41.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:41.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:41.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:41.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:41.896][ef$get] fields variable is a list.
biodb.INFO [2023-04-10 23:21:41.900][biodb::testThat]
biodb.INFO [2023-04-10 23:21:41.902][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2023-04-10 23:21:41.904][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:41.905][biodb::testThat]
biodb.ERROR[2023-04-10 23:21:41.931][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2023-04-10 23:21:41.958][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2023-04-10 23:21:41.971][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-10 23:21:41.972][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-04-10 23:21:41.974][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-04-10 23:21:41.975][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-10 23:21:41.976][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:41.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:41.978][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:41.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:41.981][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:41.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-10 23:21:41.992][biodb::testContext]
biodb.INFO [2023-04-10 23:21:41.993][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:41.995][biodb::testContext] Test context - Test conversions
biodb.INFO [2023-04-10 23:21:41.996][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:41.997][biodb::testContext]
biodb.INFO [2023-04-10 23:21:42.000][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:42.002][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:42.007][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:42.009][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-10 23:21:42.010][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-10 23:21:42.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.015][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-10 23:21:42.017][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-10 23:21:42.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.022][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-10 23:21:42.024][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-10 23:21:42.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.028][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-10 23:21:42.029][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-10 23:21:42.031][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-10 23:21:42.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.035][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-10 23:21:42.037][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-10 23:21:42.038][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-10 23:21:42.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.043][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-10 23:21:42.044][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-10 23:21:42.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.048][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-10 23:21:42.050][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-10 23:21:42.051][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-10 23:21:42.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.055][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-10 23:21:42.057][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-10 23:21:42.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.061][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-10 23:21:42.062][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-10 23:21:42.071][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-10 23:21:42.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.077][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:42.078][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-10 23:21:42.080][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-10 23:21:42.082][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-10 23:21:42.083][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-10 23:21:42.085][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-10 23:21:42.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.092][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-10 23:21:42.094][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-10 23:21:42.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.101][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-10 23:21:42.103][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-10 23:21:42.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.110][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-10 23:21:42.113][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-10 23:21:42.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.120][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-10 23:21:42.122][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-10 23:21:42.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.129][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-10 23:21:42.131][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-10 23:21:42.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.138][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:42.140][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-10 23:21:42.146][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-10 23:21:42.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.153][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-10 23:21:42.155][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-10 23:21:42.157][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-10 23:21:42.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.165][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-10 23:21:42.168][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.170][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-10 23:21:42.172][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.174][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:42.176][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.178][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.180][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.182][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.184][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:42.186][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:42.188][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.190][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-10 23:21:42.192][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:42.193][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.195][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.196][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:42.196][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:42.196][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:42.196][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:42.196][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:42.197][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:42.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.201][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:42.203][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.204][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.205][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.206][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.208][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:42.209][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:42.210][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.211][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.213][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-10 23:21:42.215][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.216][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:42.218][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.220][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:42.222][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.224][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.226][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.228][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.230][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:42.232][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:42.234][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.236][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-10 23:21:42.239][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:42.241][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.242][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.244][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:42.244][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:42.244][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:42.244][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:42.244][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:42.246][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:42.248][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.250][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.252][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:42.254][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.257][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.259][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.261][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:42.263][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:42.265][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.266][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.269][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-10 23:21:42.272][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.274][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-10 23:21:42.276][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.278][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:42.279][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.281][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.283][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.285][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.287][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:42.289][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:42.291][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.293][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-10 23:21:42.295][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:42.297][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.299][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.301][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.303][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:42.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.306][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.308][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:42.310][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.312][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.314][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.316][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.317][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:42.319][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:42.321][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.323][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.325][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-10 23:21:42.328][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.330][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:42.332][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.334][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:42.336][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.348][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.350][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.353][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.355][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:42.357][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:42.359][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.361][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-10 23:21:42.363][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:42.366][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.367][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:42.369][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.370][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:42.371][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.374][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:42.375][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:42.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:42.378][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:42.379][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.380][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:42.382][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:42.383][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:42.384][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:42.386][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:42.387][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.532][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-10 23:21:42.534][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-10 23:21:42.537][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-10 23:21:42.539][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-10 23:21:42.542][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:42.544][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-10 23:21:42.547][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:42.554][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:42.556][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-10 23:21:42.559][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-10 23:21:42.561][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:42.563][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-10 23:21:42.565][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:42.566][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:42.568][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-10 23:21:42.570][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-10 23:21:42.571][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-10 23:21:42.573][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-10 23:21:42.575][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:42.577][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-10 23:21:42.579][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-10 23:21:42.581][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-10 23:21:42.582][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-10 23:21:42.584][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-10 23:21:42.586][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-10 23:21:42.587][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-10 23:21:42.589][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-10 23:21:42.597][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-10 23:21:42.599][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-10 23:21:42.601][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-10 23:21:42.602][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-10 23:21:42.604][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-10 23:21:42.606][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-10 23:21:42.607][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-10 23:21:42.609][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-10 23:21:42.611][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-10 23:21:42.613][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-10 23:21:42.615][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-10 23:21:42.616][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-10 23:21:42.618][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-10 23:21:42.619][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-10 23:21:42.621][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-10 23:21:42.623][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-10 23:21:42.625][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-10 23:21:42.626][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-10 23:21:42.628][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-10 23:21:42.630][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-10 23:21:42.632][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-10 23:21:42.633][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-10 23:21:42.635][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-10 23:21:42.637][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-10 23:21:42.639][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-10 23:21:42.641][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-10 23:21:42.643][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-10 23:21:42.645][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-10 23:21:42.647][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-10 23:21:42.649][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-10 23:21:42.650][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-10 23:21:42.652][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-10 23:21:42.654][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-10 23:21:42.656][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-10 23:21:42.658][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-10 23:21:42.659][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-10 23:21:42.661][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-10 23:21:42.663][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-10 23:21:42.664][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-10 23:21:42.666][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:42.668][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:42.671][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-10 23:21:42.673][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-10 23:21:42.676][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-10 23:21:42.678][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-10 23:21:42.680][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-10 23:21:42.682][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-10 23:21:42.684][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-10 23:21:42.687][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-10 23:21:42.689][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-10 23:21:42.691][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-10 23:21:42.693][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-10 23:21:42.695][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-10 23:21:42.697][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-10 23:21:42.699][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-10 23:21:42.700][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-10 23:21:42.702][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-10 23:21:42.705][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:42.706][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:42.707][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.710][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:42.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:42.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:42.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:42.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:42.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:42.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:42.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:43.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.075][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:43.077][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-04-10 23:21:43.080][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:43.081][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-04-10 23:21:43.082][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:43.083][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:43.085][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:43.086][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:43.087][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:43.088][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-04-10 23:21:43.090][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-10 23:21:43.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:43.092][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:43.094][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-04-10 23:21:43.095][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-04-10 23:21:43.096][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-04-10 23:21:43.098][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:43.099][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:43.099][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:43.099][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:43.101][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-10 23:21:43.102][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:43.103][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:43.105][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:43.106][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:43.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:43.108][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:43.109][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-04-10 23:21:43.109][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-04-10 23:21:43.111][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:43.112][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:43.113][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:43.115][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-04-10 23:21:43.115][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-04-10 23:21:43.116][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:43.118][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:43.120][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-04-10 23:21:43.122][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:43.123][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:43.125][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:43.129][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-04-10 23:21:43.130][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-04-10 23:21:43.132][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-04-10 23:21:43.134][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-04-10 23:21:43.135][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:43.136][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:43.138][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-04-10 23:21:43.139][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-04-10 23:21:43.141][biodb::testThat]
biodb.INFO [2023-04-10 23:21:43.142][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2023-04-10 23:21:43.144][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:43.145][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:43.150][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-04-10 23:21:43.156][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-04-10 23:21:43.160][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.162][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-04-10 23:21:43.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.171][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-04-10 23:21:43.175][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.185][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-04-10 23:21:43.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.204][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.207][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-04-10 23:21:43.211][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.220][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-04-10 23:21:43.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.281][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.285][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-04-10 23:21:43.289][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.292][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-04-10 23:21:43.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.317][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-04-10 23:21:43.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.324][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-04-10 23:21:43.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.363][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.367][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-04-10 23:21:43.371][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.373][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-04-10 23:21:43.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.399][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-04-10 23:21:43.403][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.405][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-04-10 23:21:43.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:43.425][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:43.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2023-04-10 23:21:43.434][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:43.444][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2023-04-10 23:21:43.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:43.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:43.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:43.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:43.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:43.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:43.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-10 23:21:43.468][biodb::testThat]
biodb.INFO [2023-04-10 23:21:43.475][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2023-04-10 23:21:43.477][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:43.478][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:43.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:43.487][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-10 23:21:43.488][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-10 23:21:43.490][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2023-04-10 23:21:43.851][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2023-04-10 23:21:44.221][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-10 23:21:44.226][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2023-04-10 23:21:44.234][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2023-04-10 23:21:44.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:44.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:44.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:44.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:44.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:44.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:44.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:44.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:44.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-10 23:21:44.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-10 23:21:44.278][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2023-04-10 23:21:44.646][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2023-04-10 23:21:45.147][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-10 23:21:45.152][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2023-04-10 23:21:45.160][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2023-04-10 23:21:45.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:45.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-10 23:21:45.191][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-10 23:21:45.194][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-04-10 23:21:45.196][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-04-10 23:21:45.198][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-10 23:21:45.200][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.204][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.207][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-10 23:21:45.217][biodb::testContext]
biodb.INFO [2023-04-10 23:21:45.219][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:45.221][biodb::testContext] Test context - Test web services
biodb.INFO [2023-04-10 23:21:45.224][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:45.225][biodb::testContext]
biodb.INFO [2023-04-10 23:21:45.230][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:45.234][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:45.243][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:45.246][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-10 23:21:45.248][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-10 23:21:45.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.256][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-10 23:21:45.258][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-10 23:21:45.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.265][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-10 23:21:45.267][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-10 23:21:45.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.274][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-10 23:21:45.276][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-10 23:21:45.278][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-10 23:21:45.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.284][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-10 23:21:45.286][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-10 23:21:45.288][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-10 23:21:45.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.293][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-10 23:21:45.295][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-10 23:21:45.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.301][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-10 23:21:45.303][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-10 23:21:45.306][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-10 23:21:45.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.313][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-10 23:21:45.315][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-10 23:21:45.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.320][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-10 23:21:45.321][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-10 23:21:45.322][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-10 23:21:45.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.327][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:45.328][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-10 23:21:45.329][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-10 23:21:45.331][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-10 23:21:45.332][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-10 23:21:45.333][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-10 23:21:45.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.338][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-10 23:21:45.340][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-10 23:21:45.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.344][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-10 23:21:45.346][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-10 23:21:45.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.350][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-10 23:21:45.351][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-10 23:21:45.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.356][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-10 23:21:45.358][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-10 23:21:45.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.365][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-10 23:21:45.367][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-10 23:21:45.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.374][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:45.376][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-10 23:21:45.380][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-10 23:21:45.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.386][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-10 23:21:45.387][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-10 23:21:45.389][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-10 23:21:45.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.393][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-10 23:21:45.395][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.397][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-10 23:21:45.398][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.399][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:45.400][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.402][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.403][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.404][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.405][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:45.407][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:45.408][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.409][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-10 23:21:45.410][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:45.411][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.413][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.414][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:45.414][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:45.414][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:45.414][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:45.414][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:45.415][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:45.417][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.418][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.419][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:45.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.421][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.422][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.424][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.425][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:45.426][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:45.427][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.429][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.430][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-10 23:21:45.432][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.433][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:45.434][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.436][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:45.437][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.438][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.439][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.441][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.442][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:45.443][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:45.444][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.445][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-10 23:21:45.447][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:45.448][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.449][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.450][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:45.450][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:45.450][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:45.450][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:45.450][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:45.452][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:45.453][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.454][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.455][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:45.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.457][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.459][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.460][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.461][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:45.462][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:45.463][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.464][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.466][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-10 23:21:45.468][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.469][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-10 23:21:45.470][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.471][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:45.473][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.474][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.475][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.476][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.477][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:45.479][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:45.480][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.482][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-10 23:21:45.483][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:45.484][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.486][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.487][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.488][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:45.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.491][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.492][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:45.493][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.494][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.495][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.496][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.498][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:45.499][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:45.500][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.501][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.503][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-10 23:21:45.505][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.506][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:45.507][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.508][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:45.510][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.511][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.512][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.513][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.515][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:45.516][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:45.517][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.518][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-10 23:21:45.519][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:45.521][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.522][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.523][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.524][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:45.525][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.526][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.528][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:45.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:45.530][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:45.531][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.532][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.534][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:45.535][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:45.537][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.538][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:45.541][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:45.542][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.660][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-10 23:21:45.662][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-10 23:21:45.664][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-10 23:21:45.665][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-10 23:21:45.667][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:45.668][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-10 23:21:45.670][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:45.671][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:45.673][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-10 23:21:45.675][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-10 23:21:45.676][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:45.678][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-10 23:21:45.680][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:45.681][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:45.683][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-10 23:21:45.684][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-10 23:21:45.686][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-10 23:21:45.687][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-10 23:21:45.689][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:45.690][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-10 23:21:45.692][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-10 23:21:45.694][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-10 23:21:45.695][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-10 23:21:45.697][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-10 23:21:45.699][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-10 23:21:45.700][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-10 23:21:45.702][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-10 23:21:45.703][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-10 23:21:45.705][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-10 23:21:45.707][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-10 23:21:45.708][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-10 23:21:45.710][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-10 23:21:45.711][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-10 23:21:45.713][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-10 23:21:45.715][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-10 23:21:45.716][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-10 23:21:45.718][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-10 23:21:45.720][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-10 23:21:45.722][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-10 23:21:45.725][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-10 23:21:45.727][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-10 23:21:45.730][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-10 23:21:45.732][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-10 23:21:45.735][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-10 23:21:45.738][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-10 23:21:45.740][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-10 23:21:45.743][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-10 23:21:45.745][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-10 23:21:45.748][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-10 23:21:45.750][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-10 23:21:45.753][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-10 23:21:45.755][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-10 23:21:45.758][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-10 23:21:45.760][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-10 23:21:45.762][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-10 23:21:45.765][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-10 23:21:45.767][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-10 23:21:45.770][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-10 23:21:45.772][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-10 23:21:45.775][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-10 23:21:45.777][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-10 23:21:45.780][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-10 23:21:45.782][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-10 23:21:45.785][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-10 23:21:45.787][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-10 23:21:45.789][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-10 23:21:45.792][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:45.794][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:45.797][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-10 23:21:45.799][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-10 23:21:45.801][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-10 23:21:45.804][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-10 23:21:45.806][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-10 23:21:45.809][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-10 23:21:45.812][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-10 23:21:45.814][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-10 23:21:45.817][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-10 23:21:45.820][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-10 23:21:45.823][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-10 23:21:45.826][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-10 23:21:45.828][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-10 23:21:45.831][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-10 23:21:45.834][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-10 23:21:45.836][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-10 23:21:45.839][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:45.840][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:45.841][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.843][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:45.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:45.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:45.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:45.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:45.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:45.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:45.983][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:45.985][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-04-10 23:21:45.987][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:45.988][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.989][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.991][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:45.992][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.993][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:45.994][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:45.995][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-04-10 23:21:45.997][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-10 23:21:45.998][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:45.999][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:46.000][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-04-10 23:21:46.001][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-04-10 23:21:46.003][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-04-10 23:21:46.004][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:46.005][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:46.005][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:46.005][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:46.007][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-10 23:21:46.008][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:46.009][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:46.010][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:46.011][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:46.012][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:46.014][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:46.015][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-04-10 23:21:46.015][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-04-10 23:21:46.016][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:46.017][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:46.018][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:46.020][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-04-10 23:21:46.020][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-04-10 23:21:46.021][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:46.023][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:46.025][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-04-10 23:21:46.026][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:46.028][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:46.030][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:46.033][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-04-10 23:21:46.035][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-04-10 23:21:46.036][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-04-10 23:21:46.038][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-04-10 23:21:46.039][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:46.040][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:46.042][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-04-10 23:21:46.043][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-04-10 23:21:46.045][biodb::testThat]
biodb.INFO [2023-04-10 23:21:46.046][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2023-04-10 23:21:46.047][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:46.049][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:46.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-04-10 23:21:46.058][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:46.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-04-10 23:21:46.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:46.063][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-04-10 23:21:46.067][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:46.071][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-10 23:21:46.072][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-10 23:21:46.074][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2023-04-10 23:21:46.460][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2023-04-10 23:21:46.814][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-10 23:21:46.817][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2023-04-10 23:21:46.822][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2023-04-10 23:21:46.828][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-10 23:21:46.829][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-04-10 23:21:46.831][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-04-10 23:21:46.832][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-10 23:21:46.833][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:46.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:46.835][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:46.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:46.838][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-10 23:21:46.844][biodb::testContext]
biodb.INFO [2023-04-10 23:21:46.845][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:46.847][biodb::testContext] Test context - Non regression tests
biodb.INFO [2023-04-10 23:21:46.848][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-10 23:21:46.850][biodb::testContext]
biodb.INFO [2023-04-10 23:21:46.853][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:46.856][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:46.861][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:46.862][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-10 23:21:46.864][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-10 23:21:46.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.868][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-10 23:21:46.869][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-10 23:21:46.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.874][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-10 23:21:46.875][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-10 23:21:46.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.880][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-10 23:21:46.881][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-10 23:21:46.883][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-10 23:21:46.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.887][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-10 23:21:46.889][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-10 23:21:46.890][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-10 23:21:46.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.895][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-10 23:21:46.896][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-10 23:21:46.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.901][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-10 23:21:46.902][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-10 23:21:46.903][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-10 23:21:46.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.908][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-10 23:21:46.909][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-10 23:21:46.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.913][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-10 23:21:46.915][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-10 23:21:46.916][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-10 23:21:46.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.920][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:46.922][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-10 23:21:46.923][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-10 23:21:46.924][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-10 23:21:46.925][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-10 23:21:46.927][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-10 23:21:46.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.931][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-10 23:21:46.933][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-10 23:21:46.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.937][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-10 23:21:46.938][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-10 23:21:46.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.945][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-10 23:21:46.947][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-10 23:21:46.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.951][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-10 23:21:46.953][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-10 23:21:46.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.957][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-10 23:21:46.959][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-10 23:21:46.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.963][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-10 23:21:46.965][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-10 23:21:46.968][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-10 23:21:46.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.973][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-10 23:21:46.974][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-10 23:21:46.975][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-10 23:21:46.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:46.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:46.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:46.980][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-10 23:21:46.982][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:46.983][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-10 23:21:46.985][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:46.986][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:46.987][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:46.988][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:46.990][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:46.991][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:46.992][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:46.993][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:46.995][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:46.996][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-10 23:21:46.997][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:46.998][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.000][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.001][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:47.001][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:47.001][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:47.001][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:47.001][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:47.002][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:47.003][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.004][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.006][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:47.007][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.008][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.009][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.011][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.012][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:47.013][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:47.015][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.016][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.017][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-10 23:21:47.020][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.021][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:47.023][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.025][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:47.026][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.028][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.029][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.030][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.031][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:47.032][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:47.034][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.035][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-10 23:21:47.036][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:47.037][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.039][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.040][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:47.040][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:47.040][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:47.040][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-10 23:21:47.040][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-10 23:21:47.041][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:47.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.045][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:47.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.047][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.049][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.050][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.051][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:47.052][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:47.054][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.055][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.056][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-10 23:21:47.058][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.060][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-10 23:21:47.061][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.062][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:47.064][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.065][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.066][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.067][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.068][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-10 23:21:47.070][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:47.071][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.072][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-10 23:21:47.073][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:47.075][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.076][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.077][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.078][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:47.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.082][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:47.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.092][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.094][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.095][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:47.096][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:47.097][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.098][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.100][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-10 23:21:47.102][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.103][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-10 23:21:47.104][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.106][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:47.107][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.108][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.110][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.111][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.112][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-10 23:21:47.114][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:47.115][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.117][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-10 23:21:47.118][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:47.119][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.120][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.122][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.123][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-10 23:21:47.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.126][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:47.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.129][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.130][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.131][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.132][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:47.133][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:47.134][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.136][self$setPropertyValue]
biodb.DEBUG[2023-04-10 23:21:47.137][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:47.138][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.236][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-10 23:21:47.238][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-10 23:21:47.239][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-10 23:21:47.241][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-10 23:21:47.243][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:47.244][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-10 23:21:47.246][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:47.247][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:47.250][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-10 23:21:47.252][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-10 23:21:47.254][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:47.256][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-10 23:21:47.257][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-10 23:21:47.259][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-10 23:21:47.261][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-10 23:21:47.262][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-10 23:21:47.264][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-10 23:21:47.266][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-10 23:21:47.269][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:47.270][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-10 23:21:47.272][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-10 23:21:47.275][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-10 23:21:47.277][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-10 23:21:47.281][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-10 23:21:47.283][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-10 23:21:47.285][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-10 23:21:47.286][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-10 23:21:47.288][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-10 23:21:47.290][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-10 23:21:47.291][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-10 23:21:47.293][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-10 23:21:47.295][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-10 23:21:47.297][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-10 23:21:47.299][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-10 23:21:47.301][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-10 23:21:47.302][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-10 23:21:47.304][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-10 23:21:47.306][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-10 23:21:47.307][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-10 23:21:47.309][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-10 23:21:47.310][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-10 23:21:47.312][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-10 23:21:47.314][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-10 23:21:47.316][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-10 23:21:47.318][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-10 23:21:47.320][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-10 23:21:47.321][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-10 23:21:47.323][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-10 23:21:47.325][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-10 23:21:47.326][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-10 23:21:47.328][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-10 23:21:47.331][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-10 23:21:47.333][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-10 23:21:47.336][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-10 23:21:47.338][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-10 23:21:47.341][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-10 23:21:47.343][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-10 23:21:47.346][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-10 23:21:47.348][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-10 23:21:47.350][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-10 23:21:47.353][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-10 23:21:47.355][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-10 23:21:47.358][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-10 23:21:47.360][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-10 23:21:47.362][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-10 23:21:47.365][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-10 23:21:47.367][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:47.370][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:47.372][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-10 23:21:47.375][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-10 23:21:47.377][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-10 23:21:47.380][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-10 23:21:47.382][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-10 23:21:47.384][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-10 23:21:47.387][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-10 23:21:47.389][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-10 23:21:47.392][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-10 23:21:47.394][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-10 23:21:47.396][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-10 23:21:47.399][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-10 23:21:47.401][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-10 23:21:47.404][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-10 23:21:47.406][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-10 23:21:47.409][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-10 23:21:47.412][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-10 23:21:47.414][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-10 23:21:47.416][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.419][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-10 23:21:47.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.604][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.16-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-04-10 23:21:47.606][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-04-10 23:21:47.609][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.611][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.613][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.615][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-10 23:21:47.616][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.618][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.620][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.622][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-04-10 23:21:47.623][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-10 23:21:47.624][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-10 23:21:47.626][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.627][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-04-10 23:21:47.628][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-04-10 23:21:47.629][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-04-10 23:21:47.631][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-10 23:21:47.633][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-10 23:21:47.633][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-10 23:21:47.633][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-10 23:21:47.635][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-10 23:21:47.637][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.639][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.640][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-10 23:21:47.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-10 23:21:47.644][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-10 23:21:47.646][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-10 23:21:47.647][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-04-10 23:21:47.647][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-04-10 23:21:47.649][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-10 23:21:47.650][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-10 23:21:47.651][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-10 23:21:47.652][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-04-10 23:21:47.652][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-04-10 23:21:47.654][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-10 23:21:47.657][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-10 23:21:47.659][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-04-10 23:21:47.661][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-10 23:21:47.663][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-10 23:21:47.665][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-10 23:21:47.670][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-04-10 23:21:47.671][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-04-10 23:21:47.673][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-04-10 23:21:47.676][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-04-10 23:21:47.679][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:47.680][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-10 23:21:47.683][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-04-10 23:21:47.685][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-04-10 23:21:47.687][biodb::testThat]
biodb.INFO [2023-04-10 23:21:47.689][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2023-04-10 23:21:47.691][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-10 23:21:47.692][biodb::testThat]
biodb.DEBUG[2023-04-10 23:21:47.698][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-04-10 23:21:47.704][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:47.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-04-10 23:21:47.709][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:47.713][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-04-10 23:21:47.719][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-04-10 23:21:47.722][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-10 23:21:47.724][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2023-04-10 23:21:47.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-10 23:21:47.728][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2023-04-10 23:21:47.731][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2023-04-10 23:21:47.733][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-10 23:21:47.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2023-04-10 23:21:47.736][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-10 23:21:47.737][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-10 23:21:47.739][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-04-10 23:21:47.740][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-04-10 23:21:47.741][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-10 23:21:47.743][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-10 23:21:47.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:47.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:47.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:47.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:47.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:47.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:47.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-10 23:21:47.764][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2023-04-10 23:21:47.768][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-10 23:21:47.769][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-10 23:21:47.770][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2023-04-10 23:21:48.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2023-04-10 23:21:48.737][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-10 23:21:48.741][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2023-04-10 23:21:48.750][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2023-04-10 23:21:48.755][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2023-04-10 23:21:48.759][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-10 23:21:48.762][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-04-10 23:21:48.764][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-04-10 23:21:48.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-10 23:21:48.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:48.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:48.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:48.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:48.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:48.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-10 23:21:48.793][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.799][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.810][ef$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:48.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:48.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.815][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-04-10 23:21:48.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-04-10 23:21:48.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.825][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:48.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:48.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.831][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-10 23:21:48.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-10 23:21:48.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-10 23:21:48.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-10 23:21:48.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.847][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-10 23:21:48.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-10 23:21:48.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.855][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.857][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:48.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:48.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.861][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-04-10 23:21:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.869][ef$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:48.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:48.872][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.873][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-04-10 23:21:48.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-10 23:21:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:48.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:48.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.884][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-10 23:21:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.891][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:48.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:48.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.895][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-10 23:21:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-10 23:21:48.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.902][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:48.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:48.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-04-10 23:21:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-04-10 23:21:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:48.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:48.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.917][ef$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-04-10 23:21:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-04-10 23:21:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:48.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-04-10 23:21:48.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-04-10 23:21:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-10 23:21:48.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-10 23:21:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-10 23:21:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-10 23:21:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-10 23:21:48.985][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2023-04-10 23:21:48.987][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-10 23:21:48.988][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-04-10 23:21:48.990][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-04-10 23:21:48.991][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-10 23:21:48.992][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-10 23:21:48.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-10 23:21:48.995][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-10 23:21:48.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-10 23:21:48.998][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-10 23:21:48.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 343 ]
> 
> proc.time()
   user  system elapsed 
  21.96    0.98   30.92

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

nameusersystemelapsed
ChebiConn3.301.445.64
ChebiEntry0.670.020.70