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###
### Running command:
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### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL bgx
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* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'bgx' ...
** using staged installation
Untarring Boost header files...
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx.cc -o bgx.o
In file included from ../boostIncl/boost/config.hpp:57,
from ../boostIncl/boost/random/linear_congruential.hpp:22,
from ../boostIncl/boost/random.hpp:36,
from rand.hh:32,
from bgx.cc:32:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod<IntType, m>::invert_euclidian(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
148 | BOOST_STATIC_ASSERT(m > 0);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
152 | BOOST_STATIC_ASSERT(boost::integer_traits<IntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential<IntType, a, c, m, val>::linear_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
63 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential<IntType, a, b, p, val>::inversive_congruential(IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
50 | BOOST_STATIC_ASSERT(b >= 0);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
51 | BOOST_STATIC_ASSERT(p > 1);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
52 | BOOST_STATIC_ASSERT(a >= 1);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output<UniformRandomNumberGenerator, k, val>::init()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
124 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister<UIntType, w, n, m, r, a, u, s, b, t, c, l, val>::seed(Generator&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
99 | BOOST_STATIC_ASSERT(!std::numeric_limits<result_type>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry<IntType, m, s, r, val>::subtract_with_carry()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
83 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
84 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(UIntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
55 | BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
56 | BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(It&, It)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
69 | BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
70 | BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::result_type boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::operator()()':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
67 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
68 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base2_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
69 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::digits >= std::numeric_limits<typename base2_type::result_type>::digits);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::uniform_smallint_float(boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::base_type&, IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
121 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
122 | BOOST_STATIC_ASSERT(!std::numeric_limits<typename base_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint<IntType>::uniform_smallint(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
170 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int<IntType>::uniform_int(IntType, IntType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
47 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator<UniformRandomNumberGenerator, IntType>::random_number_generator(boost::random_number_generator<UniformRandomNumberGenerator, IntType>::base_type&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
38 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real<RealType>::uniform_real(RealType, RealType)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
41 | BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution<IntType, RealType>::poisson_distribution(const RealType&)':
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
38 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2'
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN'
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN'
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT'
39 | BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
In file included from bgx.cc:32:
rand.hh: In member function 'RealType Rand<GenType, RealType>::Normal()':
rand.hh:399:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
399 | if(u0<.5) return y; return -y;
| ^~
rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
399 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:406:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
406 | if(u0<.5) return y; return -y;
| ^~
rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
406 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:413:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
413 | if(u0<.5) return y; return -y;
| ^~
rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
413 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:420:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
420 | if(u0<.5) return y; return -y;
| ^~
rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
420 | if(u0<.5) return y; return -y;
| ^~~~~~
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx_frontend.cc -o bgx_frontend.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -std=c99 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qnorm.c -o qnorm.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rundir.cc -o rundir.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I ../boostIncl -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sokal.cc -o sokal.o
g++ -std=gnu++14 -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-bgx/00new/bgx/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bgx)
