Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:25 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the attract package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/attract.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 97/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
attract 1.50.0 (landing page) Samuel Zimmerman
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: attract |
Version: 1.50.0 |
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:attract.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings attract_1.50.0.tar.gz |
StartedAt: 2023-04-10 22:57:24 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 23:02:12 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 288.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: attract.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:attract.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings attract_1.50.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/attract.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'attract/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'attract' version '1.50.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'attract' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotsynexprs: warning in axis(1, at = tickMarks, lab = tickLabels): partial argument match of 'lab' to 'labels' removeFlatGenes: warning in topTable(fit2, coef = (1:(length(my.contrasts))), adjust = "fdr", n = nrow(dat.fr)): partial argument match of 'n' to 'number' removeFlatGenes: warning in topTable(fit2, coef = (1:(length(my.contrasts))), adjust = "fdr", n = nrow(dat.fr)): partial argument match of 'adjust' to 'adjust.method' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed calcFuncSynexprs 68.03 5.66 74.75 findAttractors 40.63 2.72 44.26 findCorrPartners 5.00 0.30 5.69 plotsynexprs 4.97 0.04 5.23 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.16-bioc/meat/attract.Rcheck/00check.log' for details.
attract.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL attract ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'attract' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (attract)
attract.Rcheck/attract-Ex.timings
name | user | system | elapsed | |
AttractorModuleSet-class | 0 | 0 | 0 | |
SynExpressionSet-class | 0 | 0 | 0 | |
attract-package | 0 | 0 | 0 | |
buildCorMatrix | 0 | 0 | 0 | |
buildKeggIncidenceMatrix | 0 | 0 | 0 | |
calcFuncSynexprs | 68.03 | 5.66 | 74.75 | |
calcInform | 0 | 0 | 0 | |
calcModfstat | 0 | 0 | 0 | |
calcRss | 0 | 0 | 0 | |
exprs.dat | 0.10 | 0.01 | 0.11 | |
filterDataSet | 0.20 | 0.03 | 0.24 | |
findAttractors | 40.63 | 2.72 | 44.26 | |
findCorrPartners | 5.00 | 0.30 | 5.69 | |
findOnepwaySynexprs | 0 | 0 | 0 | |
findSynexprs | 4.31 | 0.08 | 4.62 | |
flagPwayExists | 0 | 0 | 0 | |
getCustomGenes | 0 | 0 | 0 | |
getPwayGenes | 0 | 0 | 0 | |
loring.eset | 0.15 | 0.00 | 0.16 | |
plotsynexprs | 4.97 | 0.04 | 5.23 | |
removeFlatGenes | 0.11 | 0.01 | 0.13 | |
samp.info | 0.02 | 0.00 | 0.01 | |
subset.loring.eset | 0.06 | 0.00 | 0.06 | |