Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:32 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Xeva package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Xeva.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2171/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Xeva 1.14.0 (landing page) Benjamin Haibe-Kains
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: Xeva |
Version: 1.14.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Xeva.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Xeva_1.14.0.tar.gz |
StartedAt: 2023-04-10 23:21:12 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 23:24:44 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 212.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Xeva.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Xeva.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Xeva_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/Xeva.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Xeva/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Xeva’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Xeva’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 31 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed downloadXevaSet 0.015 0.004 6.579 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.16-bioc/meat/Xeva.Rcheck/00check.log’ for details.
Xeva.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Xeva ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘Xeva’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Xeva)
Xeva.Rcheck/Xeva-Ex.timings
name | user | system | elapsed | |
ABC | 0.004 | 0.001 | 0.004 | |
AUC | 0.013 | 0.001 | 0.015 | |
TGI | 0 | 0 | 0 | |
addExperimentalDesign | 0.083 | 0.002 | 0.085 | |
angle | 0.005 | 0.001 | 0.006 | |
batchInfo | 0.087 | 0.002 | 0.089 | |
createXevaSet | 0.068 | 0.020 | 0.096 | |
dosePlot | 0.339 | 0.010 | 0.350 | |
downloadXevaSet | 0.015 | 0.004 | 6.579 | |
drugInform | 0.079 | 0.002 | 0.080 | |
drugSensitivitySig | 0.787 | 0.010 | 0.797 | |
getExperiment | 0.107 | 0.005 | 0.114 | |
getMolecularProfiles | 0.076 | 0.001 | 0.077 | |
lmm | 0.057 | 0.003 | 0.061 | |
mRECIST | 0.002 | 0.000 | 0.001 | |
modelInfo | 0.093 | 0.005 | 0.097 | |
plotPDX | 0.884 | 0.035 | 0.919 | |
plotmRECIST | 1.352 | 0.016 | 1.368 | |
response | 0.105 | 0.001 | 0.107 | |
selectModelIds | 0.120 | 0.002 | 0.121 | |
sensitivity | 0.080 | 0.002 | 0.082 | |
setResponse | 2.122 | 0.025 | 2.147 | |
slope | 0.008 | 0.000 | 0.009 | |
subsetXeva | 0.133 | 0.001 | 0.134 | |
summarizeMolecularProfiles | 0.104 | 0.001 | 0.106 | |
summarizeResponse | 0.133 | 0.002 | 0.136 | |
waterfall | 0.586 | 0.007 | 0.594 | |