Rafael Campos-Martin
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/STAN |
| git_branch: RELEASE_3_16 |
| git_last_commit: a982cef |
| git_last_commit_date: 2023-01-19 11:18:47 -0400 (Thu, 19 Jan 2023) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:54 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the STAN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STAN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1970/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| STAN 2.26.2 (landing page) Rafael Campos-Martin
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: STAN |
| Version: 2.26.2 |
| Command: rm -rf STAN.buildbin-libdir && mkdir STAN.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=STAN.buildbin-libdir STAN_2.26.2.tar.gz |
| StartedAt: 2023-04-11 08:51:36 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:52:51 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 75.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: STAN_2.26.2.zip |
| PackageFileSize: 1.55 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf STAN.buildbin-libdir && mkdir STAN.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=STAN.buildbin-libdir STAN_2.26.2.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'STAN' ...
** using staged installation
** libs
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Bernoulli.cpp -o Bernoulli.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EmissionFactory.cpp -o EmissionFactory.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c EmissionFunction.cpp -o EmissionFunction.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HMM.cpp -o HMM.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c InitialProbability.cpp -o InitialProbability.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c JointlyIndependent.cpp -o JointlyIndependent.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MemoryAllocation.cpp -o MemoryAllocation.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Multinomial.cpp -o Multinomial.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MultivariateGaussian.cpp -o MultivariateGaussian.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c NegativeBinomial.cpp -o NegativeBinomial.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ParamContainerEmissions.cpp -o ParamContainerEmissions.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Poisson.cpp -o Poisson.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PoissonLogNormal.cpp -o PoissonLogNormal.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RAccessUtils.cpp -o RAccessUtils.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RWrapper.cpp -o RWrapper.o
RWrapper.cpp: In function 'EmissionFunction** RGETEMISSION(SEXP, int, SEXP, int*, const char*, double***, int*, int, SEXP, int*, int*, int*)':
RWrapper.cpp:350:16: warning: 'HMMEmissionFunctions' may be used uninitialized in this function [-Wmaybe-uninitialized]
350 | return HMMEmissionFunctions;
| ^~~~~~~~~~~~~~~~~~~~
RWrapper.cpp: In function 'SEXPREC* prepareEmission(const char*, SEXP, SEXP, EmissionFunction**, int)':
RWrapper.cpp:1157:16: warning: 'sexpemissionParam' may be used uninitialized in this function [-Wmaybe-uninitialized]
1157 | return sexpemissionParam;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c TransitionMatrix.cpp -o TransitionMatrix.o
g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -D_RDLL_ -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c matUtils.cpp -o matUtils.o
g++ -std=gnu++14 -shared -s -static-libgcc -o STAN.dll tmp.def Bernoulli.o EmissionFactory.o EmissionFunction.o HMM.o InitialProbability.o JointlyIndependent.o MemoryAllocation.o Multinomial.o MultivariateGaussian.o NegativeBinomial.o ParamContainerEmissions.o Poisson.o PoissonLogNormal.o RAccessUtils.o RWrapper.o TransitionMatrix.o matUtils.o -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/STAN.buildbin-libdir/00LOCK-STAN/00new/STAN/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'STAN' as STAN_2.26.2.zip
* DONE (STAN)