Back to Multiple platform build/check report for BioC 3.16:   simplified   long
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This page was generated on 2023-04-12 11:06:22 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RCX on lconway


To the developers/maintainers of the RCX package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCX.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1619/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCX 1.2.2  (landing page)
Florian Auer
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/RCX
git_branch: RELEASE_3_16
git_last_commit: 85e1d89
git_last_commit_date: 2023-01-26 12:28:06 -0400 (Thu, 26 Jan 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RCX
Version: 1.2.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RCX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RCX_1.2.2.tar.gz
StartedAt: 2023-04-10 22:07:38 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 22:08:26 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 48.3 seconds
RetCode: 0
Status:   OK  
CheckDir: RCX.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RCX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RCX_1.2.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/RCX.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCX/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCX’ version ‘1.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RCX.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RCX
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘RCX’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RCX)

Tests output

RCX.Rcheck/tests/testthat.Rout


R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(RCX)
> 
> test_check("RCX")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 60 ]
> 
> proc.time()
   user  system elapsed 
  2.227   0.128   2.353 

Example timings

RCX.Rcheck/RCX-Ex.timings

nameusersystemelapsed
CartesianLayout0.0030.0010.004
Convert-Names-and-Classes0.0010.0010.001
CyGroups0.0040.0000.005
CyHiddenAttributes0.1170.0060.124
CyNetworkRelations0.0020.0010.001
CySubNetworks0.0020.0000.002
CyTableColumn0.0040.0010.004
CyVisualProperties0.0150.0020.017
CyVisualProperty0.0090.0010.010
CyVisualPropertyDependencies0.0030.0010.003
CyVisualPropertyMappings0.0070.0010.008
CyVisualPropertyProperties0.0030.0000.003
EdgeAttributes0.0160.0010.016
Edges0.0020.0000.002
Igraph2.1420.0422.189
Meta-data0.0240.0010.025
NetworkAttributes0.0100.0010.010
NodeAttributes0.0150.0020.016
Nodes0.0020.0000.002
RCX-object0.1950.0020.197
aspectClasses0.0010.0000.001
checks0.0000.0010.000
convert-data-types-and-values0.0010.0000.001
convert2json000
countElements0.0060.0000.006
custom-print0.0040.0010.004
dot-addAspectNameToJson000
dot-addAttributeData000
dot-aspectClass000
dot-convertRawList000
dot-createAttributeAspect000
dot-createCyVpPorD0.0000.0000.001
dot-filterBy0.0010.0010.001
dot-format0.0000.0000.001
dot-infer000
dot-json2RDataType0.0000.0000.001
dot-jsonL0.0000.0000.001
dot-jsonV0.0000.0000.001
dot-log000
dot-mergeAttributesAspect000
dot-mergeIdAspect000
dot-modClass000
dot-pasteC000
dot-renameDF0.0010.0000.002
dot-stop0.0000.0000.001
dot-summaryAspect0.0020.0010.002
dot-transformListLength-set0.0020.0000.002
dot-transformVLD0.0030.0010.003
getCyVisualProperty0.0100.0010.011
graphNEL2.2310.0242.259
hasIds0.0010.0010.001
idProperty0.0010.0000.001
jsonToRCX0.0010.0010.002
markAttributeColumn0.0010.0000.001
markRefColumn0.0010.0000.002
maxId0.0010.0000.001
rcxToJson0.0020.0000.002
readCX0.5580.0080.568
referredBy0.0060.0000.006
refersTo0.0000.0000.001
setExtension000
summary0.0090.0000.010
toCX0.0080.0000.009
updateCartesianLayout0.0310.0010.033
updateCyGroups0.0260.0010.027
updateCyHiddenAttributes0.0320.0010.033
updateCyNetworkRelations0.0280.0010.029
updateCySubNetworks0.0200.0000.021
updateCyTableColumn0.0370.0010.037
updateCyVisualProperties0.1790.0060.184
updateCyVisualProperty0.0490.0020.052
updateEdgeAttributes0.0370.0010.039
updateEdges0.0150.0010.015
updateMetaDataProperties0.0140.0010.015
updateNetworkAttributes0.0360.0000.037
updateNodeAttributes0.0410.0010.042
updateNodes0.0110.0000.011
validate0.2030.0030.207
visualize0.0050.0000.006
writeCX000
writeHTML0.0550.0460.106