Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:19 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the PepsNMR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PepsNMR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1461/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PepsNMR 1.16.0 (landing page) Manon Martin
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: PepsNMR |
Version: 1.16.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.16.0.tar.gz |
StartedAt: 2023-04-10 21:48:43 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 21:57:31 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 527.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PepsNMR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/PepsNMR.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PepsNMR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PepsNMR’ version ‘1.16.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PepsNMR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed PreprocessingChain 209.900 17.424 227.997 PEPSNMR-package 206.297 17.230 224.237 Warping 9.709 1.266 11.008 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
name | user | system | elapsed | |
Apodization | 0.584 | 0.055 | 0.647 | |
BaselineCorrection | 0.528 | 0.099 | 0.633 | |
Bucketing | 0.062 | 0.011 | 0.073 | |
Draw | 1.086 | 0.045 | 1.138 | |
DrawPCA | 0.522 | 0.018 | 0.542 | |
DrawSignal | 0.557 | 0.020 | 0.580 | |
FirstOrderPhaseCorrection | 0.031 | 0.003 | 0.034 | |
FourierTransform | 0.029 | 0.005 | 0.034 | |
GroupDelayCorrection | 0.050 | 0.012 | 0.062 | |
InternalReferencing | 0.024 | 0.001 | 0.025 | |
NegativeValuesZeroing | 0.025 | 0.009 | 0.034 | |
Normalization | 0.012 | 0.001 | 0.013 | |
PEPSNMR-package | 206.297 | 17.230 | 224.237 | |
PreprocessingChain | 209.900 | 17.424 | 227.997 | |
ReadFids | 0.190 | 0.066 | 0.257 | |
RegionRemoval | 0.010 | 0.000 | 0.011 | |
SolventSuppression | 0.107 | 0.043 | 0.151 | |
Warping | 9.709 | 1.266 | 11.008 | |
WindowSelection | 0.020 | 0.000 | 0.021 | |
ZeroFilling | 0.058 | 0.000 | 0.058 | |
ZeroOrderPhaseCorrection | 0.059 | 0.000 | 0.060 | |
ZoneAggregation | 0.240 | 0.065 | 0.309 | |