Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:13 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MassSpecWavelet package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MassSpecWavelet.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1101/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MassSpecWavelet 1.64.1 (landing page) Sergio Oller Moreno
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: MassSpecWavelet |
Version: 1.64.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MassSpecWavelet.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MassSpecWavelet_1.64.1.tar.gz |
StartedAt: 2023-04-10 21:00:13 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 21:00:51 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 37.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MassSpecWavelet.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MassSpecWavelet.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MassSpecWavelet_1.64.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/MassSpecWavelet.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MassSpecWavelet/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MassSpecWavelet’ version ‘1.64.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MassSpecWavelet’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runit.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.16-bioc/meat/MassSpecWavelet.Rcheck/00check.log’ for details.
MassSpecWavelet.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MassSpecWavelet ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘MassSpecWavelet’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c find_local_maximum.c -o find_local_maximum.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MassSpecWavelet.so find_local_maximum.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-MassSpecWavelet/00new/MassSpecWavelet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MassSpecWavelet)
MassSpecWavelet.Rcheck/tests/runit.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > stopifnot(require(RUnit, quietly = TRUE)) > stopifnot(require(MassSpecWavelet, quietly = TRUE)) > ## Define tests > testSuite <- defineTestSuite(name = "MassSpecWavelet Unit Tests", + dirs = system.file("tests", package = "MassSpecWavelet"), + testFuncRegexp = "^[Tt]est+", + rngKind = "Mersenne-Twister", + rngNormalKind = "Inversion" + ) > tests <- runTestSuite(testSuite) # Run tests Executing test function test01_cwt ... done successfully. Executing test function test02_cwt ... done successfully. Executing test function test01_localMaximum ... done successfully. Executing test function test02_checkIdenticalResults_classic_vs_faster ... done successfully. Executing test function test03_check_new_does_not_miss_maxima ... done successfully. Executing test function test01_peakDetection ... done successfully. Executing test function test02_peakDetection ... done successfully. > printTextProtocol(tests) # Print results RUNIT TEST PROTOCOL -- Mon Apr 10 21:00:41 2023 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : MassSpecWavelet Unit Tests - 7 test functions, 0 errors, 0 failures Details *************************** Test Suite: MassSpecWavelet Unit Tests Test function regexp: ^[Tt]est+ Test file regexp: ^runit.+\.[rR]$ Involved directory: /Library/Frameworks/R.framework/Versions/4.2/Resources/library/MassSpecWavelet/tests --------------------------- Test file: /Library/Frameworks/R.framework/Versions/4.2/Resources/library/MassSpecWavelet/tests/runit.cwt.R test01_cwt: (1 checks) ... OK (0 seconds) test02_cwt: (2 checks) ... OK (0.01 seconds) --------------------------- Test file: /Library/Frameworks/R.framework/Versions/4.2/Resources/library/MassSpecWavelet/tests/runit.localMaximum.R test01_localMaximum: (1 checks) ... OK (0 seconds) test02_checkIdenticalResults_classic_vs_faster: (240 checks) ... OK (1.47 seconds) test03_check_new_does_not_miss_maxima: (240 checks) ... OK (0.26 seconds) --------------------------- Test file: /Library/Frameworks/R.framework/Versions/4.2/Resources/library/MassSpecWavelet/tests/runit.peakDetectionCWT.R test01_peakDetection: (3 checks) ... OK (0.02 seconds) test02_peakDetection: (2 checks) ... OK (0.03 seconds) > # Return success or failure to R CMD CHECK > if (getErrors(tests)$nFail > 0) stop("TEST FAILED!") > if (getErrors(tests)$nErr > 0) stop("TEST HAD ERRORS!") > if (getErrors(tests)$nTestFunc < 1) stop("NO TEST FUNCTIONS RUN!") > > proc.time() user system elapsed 1.894 0.179 2.082
MassSpecWavelet.Rcheck/MassSpecWavelet-Ex.timings
name | user | system | elapsed | |
MassSpecWavelet-package | 0.627 | 0.104 | 0.734 | |
cwt | 0.703 | 0.091 | 0.799 | |
extendLength | 0 | 0 | 0 | |
extendNBase | 0 | 0 | 0 | |
getLocalMaximumCWT | 0.191 | 0.026 | 0.218 | |
getRidge | 0.102 | 0.013 | 0.117 | |
getRidgeLength | 0.000 | 0.000 | 0.001 | |
identifyMajorPeaks | 1.408 | 0.132 | 1.547 | |
localMaximum | 0.054 | 0.002 | 0.057 | |
mexh | 0.000 | 0.001 | 0.002 | |
peakDetectionCWT | 2.134 | 0.244 | 2.385 | |
plotLocalMax | 0.083 | 0.006 | 0.089 | |
plotPeak | 0.542 | 0.102 | 0.646 | |
plotRidgeList | 0.136 | 0.011 | 0.149 | |
prepareWavelets | 0.001 | 0.001 | 0.002 | |
tuneInPeakInfo | 0.713 | 0.081 | 0.801 | |