Greg Finak
| Snapshot Date: 2023-01-15 14:00:06 -0500 (Sun, 15 Jan 2023) |
| git_url: https://git.bioconductor.org/packages/MIMOSA |
| git_branch: RELEASE_3_16 |
| git_last_commit: aedd0eb |
| git_last_commit_date: 2022-11-01 11:09:12 -0500 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2023-01-16 11:07:06 -0500 (Mon, 16 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4509 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" | 4287 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4316 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MIMOSA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MIMOSA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1204/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MIMOSA 1.36.0 (landing page) Greg Finak
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MIMOSA |
| Version: 1.36.0 |
| Command: rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=MIMOSA.buildbin-libdir MIMOSA_1.36.0.tar.gz |
| StartedAt: 2023-01-16 07:55:28 -0500 (Mon, 16 Jan 2023) |
| EndedAt: 2023-01-16 07:56:24 -0500 (Mon, 16 Jan 2023) |
| EllapsedTime: 56.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MIMOSA_1.36.0.zip |
| PackageFileSize: 901.9 KiB |
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### Running command:
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### rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=MIMOSA.buildbin-libdir MIMOSA_1.36.0.tar.gz
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* installing *source* package 'MIMOSA' ...
** using staged installation
** libs
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I"F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BetaMix.cpp -o BetaMix.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I"F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MCMC.cpp -o MCMC.o
MCMC.cpp: In function 'SEXPREC* fitMCMC(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
MCMC.cpp:73:9: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
73 | if(file==NULL|fileP==NULL){
| ^
MCMC.cpp:88:18: warning: comparison of integer expressions of different signedness: 'std::vector<double>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
88 | if(alphas.size()!=stim.ncol()){
| ~~~~~~~~~~~~~^~~~~~~~~~~~~
MCMC.cpp:189:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
189 | for(int i=0;i<alphas.size();i++){
| ~^~~~~~~~~~~~~~
MCMC.cpp:192:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
192 | for(int i=0;i<alphau.size();i++){
| ~^~~~~~~~~~~~~~
MCMC.cpp:524:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
524 | for(int j=0;j<p.size();j++){
| ~^~~~~~~~~
MCMC.cpp:544:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
544 | for(int obs=0;obs<alphas.size();obs++){
| ~~~^~~~~~~~~~~~~~
MCMC.cpp:547:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
547 | for(int obs=0;obs<alphau.size();obs++){
| ~~~^~~~~~~~~~~~~~
MCMC.cpp: In function 'double lkbeta(const std::vector<double>&)':
MCMC.cpp:631:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
631 | for(int i=0;i<alpha.size();i++){
| ~^~~~~~~~~~~~~
MCMC.cpp: In function 'void simZ(double&, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<bool>&, int, int)':
MCMC.cpp:681:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
681 | for(i=0;i < lnull.size(); i++){
| ~~^~~~~~~~~~~~~~
MCMC.cpp: In function 'double normconstIBeta(double, double, double, double)':
MCMC.cpp:815:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
815 | for(int i=0;i<upper.size();i++){
| ~^~~~~~~~~~~~~
MCMC.cpp: In function 'double nc(double, double, double, double, double)':
MCMC.cpp:888:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
888 | for(int i=0;i<(s.size()-1);i++){
| ~^~~~~~~~~~~~~
MCMC.cpp:893:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
893 | for(int i=0;i<s.size();i++){
| ~^~~~~~~~~
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c MIMOSA_init.c -o MIMOSA_init.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betaintegral.c -o betaintegral.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I"F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c betaintegralRcpp.cpp -o betaintegralRcpp.o
g++ -std=gnu++11 -shared -s -static-libgcc -o MIMOSA.dll tmp.def BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -lm -lstdc++ -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -IF:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/MIMOSA.buildbin-libdir/00LOCK-MIMOSA/00new/MIMOSA/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MIMOSA' as MIMOSA_1.36.0.zip
* DONE (MIMOSA)