| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:13 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MACPET package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1075/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Ioannis Vardaxis
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: MACPET |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MACPET |
| StartedAt: 2023-04-10 16:59:00 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 16:59:15 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 15.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MACPET
###
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* checking for file ‘MACPET/DESCRIPTION’ ... OK
* preparing ‘MACPET’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘MACPET’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp:329:9: warning: variable 'UDeps' set but not used [-Wunused-but-set-variable]
int UDeps=0,UMinInd=0,DMinInd=0,ValidPairs=0;//the total U and D which are higher than eps,
^
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: use of undeclared identifier 'DOUBLE_EPS'
double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
^
Stage_3_PeakFinderSubFunctions.cpp:1149:43: error: use of undeclared identifier 'DOUBLE_EPS'
double k_g=std::max(std::sqrt(DOUBLE_EPS),Ak_g*(Bk_g-Ck_g));
^
Stage_3_PeakFinderSubFunctions.cpp:1153:75: error: use of undeclared identifier 'DOUBLE_EPS'
my_g[g-1]=Bk_g+std::min(B_my_g[g-1]/C_my_g[g-1],1.0-std::sqrt(DOUBLE_EPS))*k_g;
^
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
^
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
^
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
^
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
^
1 warning and 7 errors generated.
make: *** [Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package ‘MACPET’
* removing ‘/private/tmp/RtmpA6DFOp/Rinst153861d16e016/MACPET’
-----------------------------------
ERROR: package installation failed