| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:05 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the GeneSelectMMD package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneSelectMMD.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 768/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeneSelectMMD 2.42.3 (landing page) Weiliang Qiu
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: GeneSelectMMD |
| Version: 2.42.3 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL GeneSelectMMD |
| StartedAt: 2023-04-10 15:10:52 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 15:11:03 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 10.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL GeneSelectMMD
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘GeneSelectMMD’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c Qfunc.f -o Qfunc.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c blas.f -o blas.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c isnan.c -o isnan.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c lbfgsb.f -o lbfgsb.o
lbfgsb.f:1409:0:
1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm,
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Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
lbfgsb.f:1482:0:
1482 | t(nbreak) = tl/(-neggi)
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Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c linpack.f -o linpack.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c llkhFun.f -o llkhFun.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c myTtest.f -o myTtest.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c paraEstLoop.f -o paraEstLoop.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c pt.c -o pt.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c timer.f -o timer.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c wiFun.f -o wiFun.o
gcc -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneSelectMMD)