| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:06 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the EBcoexpress package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBcoexpress.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 587/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EBcoexpress 1.42.0 (landing page) John A. Dawson
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: EBcoexpress |
| Version: 1.42.0 |
| Command: rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EBcoexpress_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EBcoexpress.buildbin-libdir |
| StartedAt: 2023-04-10 23:41:49 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 23:41:58 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 9.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: EBcoexpress_1.42.0.tgz |
| PackageFileSize: 3.047 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EBcoexpress_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EBcoexpress.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=EBcoexpress.buildbin-libdir EBcoexpress_1.42.0.tar.gz' >>>>>>> * installing *source* package ‘EBcoexpress’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c EBcoexpress.c -o EBcoexpress.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EBcoexpress.so EBcoexpress.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/EBcoexpress.buildbin-libdir/00LOCK-EBcoexpress/00new/EBcoexpress/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EBcoexpress) >>>>>>> >>>>>>> FIXING LINKS FOR EBcoexpress.buildbin-libdir/EBcoexpress/libs/EBcoexpress.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "EBcoexpress.buildbin-libdir/EBcoexpress/libs/EBcoexpress.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "EBcoexpress.buildbin-libdir/EBcoexpress/libs/EBcoexpress.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "EBcoexpress.buildbin-libdir/EBcoexpress/libs/EBcoexpress.so"