Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:06:06 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the EBSeqHMM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBSeqHMM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 591/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
EBSeqHMM 1.32.0 (landing page) Ning Leng
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: EBSeqHMM |
Version: 1.32.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:EBSeqHMM.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings EBSeqHMM_1.32.0.tar.gz |
StartedAt: 2023-04-10 20:01:35 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 20:02:32 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 56.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: EBSeqHMM.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:EBSeqHMM.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings EBSeqHMM_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/EBSeqHMM.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘EBSeqHMM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘EBSeqHMM’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EBSeqHMM’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE EBHMMNBfun: no visible binding for global variable ‘median’ EBHMMNBfun : <anonymous>: no visible global function definition for ‘quantile’ EBHMMNBfun: no visible global function definition for ‘optim’ EBHMMNBfunForMulti: no visible binding for global variable ‘median’ EBHMMNBfunForMulti : <anonymous>: no visible global function definition for ‘quantile’ EBHMMNBfunForMulti: no visible global function definition for ‘optim’ EBSeqHMMTest : <anonymous>: no visible global function definition for ‘quantile’ EBTest_ext: no visible global function definition for ‘quantile’ EBTest_ext: no visible binding for global variable ‘var’ PlotExp: no visible global function definition for ‘axis’ PlotExp : <anonymous>: no visible global function definition for ‘median’ PlotExp: no visible global function definition for ‘lines’ beta.mom: no visible global function definition for ‘var’ Undefined global functions or variables: axis lines median optim quantile var Consider adding importFrom("graphics", "axis", "lines") importFrom("stats", "median", "optim", "quantile", "var") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.16-bioc/meat/EBSeqHMM.Rcheck/00check.log’ for details.
EBSeqHMM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL EBSeqHMM ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘EBSeqHMM’ ... ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EBSeqHMM)
EBSeqHMM.Rcheck/EBSeqHMM-Ex.timings
name | user | system | elapsed | |
EBHMMNBMultiEM_2chain | 0.470 | 0.016 | 0.488 | |
EBHMMNBfun | 0.034 | 0.001 | 0.036 | |
EBHMMNBfunForMulti | 0.148 | 0.007 | 0.155 | |
EBSeqHMM-package | 0.375 | 0.009 | 0.384 | |
EBSeqHMMTest | 0.407 | 0.008 | 0.416 | |
EBTest_ext | 0.121 | 0.004 | 0.124 | |
GeneExampleData | 0.005 | 0.002 | 0.006 | |
GetAllPaths | 0.411 | 0.006 | 0.419 | |
GetConfidentCalls | 0.395 | 0.006 | 0.401 | |
GetDECalls | 0.384 | 0.006 | 0.390 | |
IsoExampleList | 0.005 | 0.001 | 0.006 | |
LikefunNBHMM | 0.007 | 0.001 | 0.008 | |
PlotExp | 0.004 | 0.001 | 0.006 | |
beta.mom | 0.001 | 0.000 | 0.000 | |
f0 | 0.000 | 0.001 | 0.001 | |