| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:03 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DNAcopy package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DNAcopy.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 560/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DNAcopy 1.72.3 (landing page) Venkatraman E. Seshan
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: DNAcopy |
| Version: 1.72.3 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL DNAcopy |
| StartedAt: 2023-04-10 15:06:46 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 15:06:54 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 8.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL DNAcopy
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘DNAcopy’ ...
** using staged installation
** libs
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f:283:0:
283 | iseg(2) = tmaxj
|
Warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cbsWtstats.f:282:0:
282 | iseg(1) = tmaxi
|
Warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c cbststats.f -o cbststats.o
cbststats.f:258:0:
258 | tmaxj = sxmxi + i2j
|
Warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c changepoints.f -o changepoints.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c esegment.f -o esegment.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c prune.f -o prune.o
gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c rshared.c -o rshared.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c segmentp.f -o segmentp.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c smoothCNA.f -o smoothCNA.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -Wall -c tailprobs.f -o tailprobs.o
gcc -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-DNAcopy/00new/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DNAcopy)