Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:31 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the DFP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DFP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 529/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DFP 1.56.0 (landing page) Rodrigo Alvarez-Glez
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: DFP |
Version: 1.56.0 |
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DFP.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings DFP_1.56.0.tar.gz |
StartedAt: 2023-04-11 00:51:19 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 00:52:02 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 42.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DFP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DFP.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings DFP_1.56.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/DFP.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'DFP/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'DFP' version '1.56.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DFP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'Biobase' which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotDiscriminantFuzzyPattern: warning in matrix(x, nr = ly, nc = lx, byrow = TRUE): partial argument match of 'nr' to 'nrow' plotDiscriminantFuzzyPattern: warning in matrix(x, nr = ly, nc = lx, byrow = TRUE): partial argument match of 'nc' to 'ncol' plotDiscriminantFuzzyPattern: warning in matrix(y, nr = ly, nc = lx): partial argument match of 'nr' to 'nrow' plotDiscriminantFuzzyPattern: warning in matrix(y, nr = ly, nc = lx): partial argument match of 'nc' to 'ncol' .plotGeneMF: no visible global function definition for 'curve' .plotGeneMF: no visible binding for global variable 'x' .plotGeneMF: no visible global function definition for 'abline' .plotGeneMF: no visible global function definition for 'palette' .plotGeneMF: no visible global function definition for 'rainbow' .plotGeneMF: no visible global function definition for 'legend' calculateFuzzyPatterns: no visible global function definition for 'head' discretizeExpressionValues: no visible global function definition for 'head' discriminantFuzzyPattern: no visible global function definition for 'head' plotDiscriminantFuzzyPattern: no visible global function definition for 'image' plotDiscriminantFuzzyPattern: no visible global function definition for 'par' plotDiscriminantFuzzyPattern: no visible global function definition for 'axis' plotDiscriminantFuzzyPattern: no visible global function definition for 'text' plotMembershipFunctions: no visible global function definition for 'par' readCSV: no visible global function definition for 'read.table' readCSV: no visible global function definition for 'head' Undefined global functions or variables: abline axis curve head image legend palette par rainbow read.table text x Consider adding importFrom("grDevices", "palette", "rainbow") importFrom("graphics", "abline", "axis", "curve", "image", "legend", "par", "text") importFrom("utils", "head", "read.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'F:/biocbuild/bbs-3.16-bioc/meat/DFP.Rcheck/00check.log' for details.
DFP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL DFP ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'DFP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DFP)
DFP.Rcheck/DFP-Ex.timings
name | user | system | elapsed | |
DFP-package | 0.89 | 0.05 | 0.94 | |
ExpressionLevel-class | 0 | 0 | 0 | |
HighExpressionLevel-class | 0 | 0 | 0 | |
LowExpressionLevel-class | 0 | 0 | 0 | |
MediumExpressionLevel-class | 0 | 0 | 0 | |
discriminantFuzzyPattern | 0.74 | 0.03 | 0.76 | |
readCSV | 0.11 | 0.00 | 0.11 | |
rmadataset | 0.01 | 0.00 | 0.02 | |