Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:29 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CONFESS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CONFESS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 400/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CONFESS 1.26.0 (landing page) Diana LOW
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: CONFESS |
Version: 1.26.0 |
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CONFESS.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings CONFESS_1.26.0.tar.gz |
StartedAt: 2023-04-11 00:17:25 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 00:23:06 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 341.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: CONFESS.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CONFESS.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings CONFESS_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/CONFESS.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'CONFESS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CONFESS' version '1.26.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CONFESS' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' See 'F:/biocbuild/bbs-3.16-bioc/meat/CONFESS.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Fluo_CV_prep 37.02 1.71 38.75 Fluo_adjustment 16.25 0.46 16.72 Fluo_modeling 12.86 0.66 13.52 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'F:/biocbuild/bbs-3.16-bioc/meat/CONFESS.Rcheck/00check.log' for details.
CONFESS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL CONFESS ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'CONFESS' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** testing if installed package can be loaded from final location Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** testing if installed package keeps a record of temporary installation path * DONE (CONFESS)
CONFESS.Rcheck/CONFESS-Ex.timings
name | user | system | elapsed | |
FluoSelection_byRun | 0.02 | 0.00 | 0.01 | |
Fluo_CV_modeling | 0 | 0 | 0 | |
Fluo_CV_prep | 37.02 | 1.71 | 38.75 | |
Fluo_adjustment | 16.25 | 0.46 | 16.72 | |
Fluo_inspection | 1.54 | 0.03 | 1.57 | |
Fluo_modeling | 12.86 | 0.66 | 13.52 | |
Fluo_ordering | 0.74 | 0.00 | 0.74 | |
LocationMatrix | 0 | 0 | 0 | |
cluster2outlier | 0 | 0 | 0 | |
createFluo | 0.01 | 0.00 | 0.01 | |
defineLocClusters | 0.05 | 0.00 | 0.07 | |
files | 0 | 0 | 0 | |
getFluo | 0.03 | 0.00 | 0.03 | |
getFluo_byRun | 0.03 | 0.00 | 0.03 | |
pathEstimator | 0.02 | 0.00 | 0.02 | |
readFiles | 0.01 | 0.00 | 0.01 | |
simcells | 0.99 | 0.03 | 1.02 | |
spotEstimator | 0 | 0 | 0 | |