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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ttgsea.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ttgsea_1.4.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/ttgsea.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ttgsea/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ttgsea’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ttgsea’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
predict_model 42.234  9.279  28.279
fit_model     39.452  5.377  28.467
text_token    21.264  3.035  13.489
token_vector  19.575  1.192  12.418
bi_gru         7.160  1.388   9.165
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ttgsea
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘ttgsea’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ttgsea)

R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ttgsea)
Loading required package: keras
> 
> test_check("ttgsea")
2022-10-19 09:17:46.026683: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x7fc35e46c890 initialized for platform Host (this does not guarantee that XLA will be used). Devices:
2022-10-19 09:17:46.026737: I tensorflow/compiler/xla/service/service.cc:176]   StreamExecutor device (0): Host, Default Version

 1/45 [..............................] - ETA: 0s - loss: 1.3688 - pearson_correlation: -0.0419
 2/45 [>.............................] - ETA: 1s - loss: 1.5942 - pearson_correlation: 0.0839 
 3/45 [=>............................] - ETA: 1s - loss: 1.6061 - pearson_correlation: 0.0643
 4/45 [=>............................] - ETA: 1s - loss: 1.6107 - pearson_correlation: 0.1103
 6/45 [===>..........................] - ETA: 1s - loss: 1.6231 - pearson_correlation: 0.1308
 8/45 [====>.........................] - ETA: 1s - loss: 1.5697 - pearson_correlation: 0.1246
10/45 [=====>........................] - ETA: 1s - loss: 1.5509 - pearson_correlation: 0.1154
12/45 [=======>......................] - ETA: 1s - loss: 1.5300 - pearson_correlation: 0.1234
14/45 [========>.....................] - ETA: 1s - loss: 1.5054 - pearson_correlation: 0.1206
16/45 [=========>....................] - ETA: 1s - loss: 1.5035 - pearson_correlation: 0.1307
18/45 [===========>..................] - ETA: 1s - loss: 1.5241 - pearson_correlation: 0.1111
20/45 [============>.................] - ETA: 1s - loss: 1.5228 - pearson_correlation: 0.1107
22/45 [=============>................] - ETA: 1s - loss: 1.5471 - pearson_correlation: 0.1152
24/45 [===============>..............] - ETA: 0s - loss: 1.5418 - pearson_correlation: 0.1155
26/45 [================>.............] - ETA: 0s - loss: 1.5558 - pearson_correlation: 0.1147
28/45 [=================>............] - ETA: 0s - loss: 1.5700 - pearson_correlation: 0.1239
30/45 [===================>..........] - ETA: 0s - loss: 1.5653 - pearson_correlation: 0.1226
32/45 [====================>.........] - ETA: 0s - loss: 1.5585 - pearson_correlation: 0.1066
34/45 [=====================>........] - ETA: 0s - loss: 1.5548 - pearson_correlation: 0.0971
36/45 [=======================>......] - ETA: 0s - loss: 1.5530 - pearson_correlation: 0.0959
38/45 [========================>.....] - ETA: 0s - loss: 1.5614 - pearson_correlation: 0.1009
40/45 [=========================>....] - ETA: 0s - loss: 1.5680 - pearson_correlation: 0.1122
42/45 [===========================>..] - ETA: 0s - loss: 1.5720 - pearson_correlation: 0.1139
44/45 [============================>.] - ETA: 0s - loss: 1.5592 - pearson_correlation: 0.1154
45/45 [==============================] - 2s 44ms/step - loss: 1.5588 - pearson_correlation: 0.1097
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
> 
> proc.time()
   user  system elapsed 
 42.463   8.889  36.032