Jianhong Ou
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/trackViewer |
| git_branch: RELEASE_3_15 |
| git_last_commit: 7878202 |
| git_last_commit_date: 2022-05-04 16:37:29 -0400 (Wed, 04 May 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:22:26 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the trackViewer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trackViewer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2032/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| trackViewer 1.32.1 (landing page) Jianhong Ou
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: trackViewer |
| Version: 1.32.1 |
| Command: rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir trackViewer_1.32.1.tar.gz |
| StartedAt: 2022-10-19 06:42:14 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 06:43:57 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 103.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: trackViewer_1.32.1.zip |
| PackageFileSize: 6.114 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir trackViewer_1.32.1.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'trackViewer' ...
** using staged installation
** libs
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hic.cpp -o hic.o
hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)':
hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable]
247 | long nviPosition = readLong(ifile);
| ^~~~~~~~~~~
hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable]
248 | long nviLength = readLong(ifile);
| ^~~~~~~~~
hic.cpp: In function 'std::vector<cellData> getByCoor(std::string, int, int, std::string, int, int, int, std::string, std::string, HicFileHead&, HicFileFoot&, std::ifstream&)':
hic.cpp:751:19: warning: '*((void*)(& bd)+8).resolutions::nResolutions' may be used uninitialized in this function [-Wmaybe-uninitialized]
751 | for(int i=0; i<data.nResolutions; i++){
| ~^~~~~~~~~~~~~~~~~~
hic.cpp:797:10: note: '*((void*)(& bd)+8).resolutions::nResolutions' was declared here
797 | body bd;
| ^~
hic.cpp:797:10: warning: '*((void*)(& bd)+8).resolutions::res' may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -std=gnu++11 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/meat/trackViewer.buildbin-libdir/00LOCK-trackViewer/00new/trackViewer/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.32.1.zip
* DONE (trackViewer)