Multiple platform build/check report for BioC 3.15 - BUILD BIN results for sva on riesling1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 20.04.4 LTS)	x86_64	R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"	4334
riesling1	Windows Server 2019 Standard	x64	R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"	4097
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences"	4083
merida1	macOS 10.14.6 Mojave	x86_64	R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences"	4134
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the sva package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sva.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

Summary

Package: sva

Version: 3.43.0

Command: rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=sva.buildbin-libdir sva_3.43.0.tar.gz

StartedAt: 2022-03-17 21:43:28 -0400 (Thu, 17 Mar 2022)

EndedAt: 2022-03-17 21:44:52 -0400 (Thu, 17 Mar 2022)

EllapsedTime: 84.0 seconds

RetCode: 0

Status: OK

PackageFile: sva_3.43.0.zip

PackageFileSize: 588.9 KiB

Command output

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###
### Running command:
###
###   rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=sva.buildbin-libdir sva_3.43.0.tar.gz
###
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* installing *source* package 'sva' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c sva.c -o sva.o
sva.c:27:34: warning: missing braces around initializer [-Wmissing-braces]
 R_CallMethodDef callMethods[]  = {
                                  ^
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/sva.buildbin-libdir/00LOCK-sva/00new/sva/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sva'
    finding HTML links ... done
    ComBat                                  html  
    ComBat_seq                              html  
    empirical.controls                      html  
    f.pvalue                                html  
    fstats                                  html  
    fsva                                    html  
    irwsva.build                            html  
    num.sv                                  html  
    psva                                    html  
    qsva                                    html  
    read.degradation.matrix                 html  
    ssva                                    html  
    sva                                     html  
    sva.check                               html  
    sva_network                             html  
    svaseq                                  html  
    twostepsva.build                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'sva' as sva_3.43.0.zip
* DONE (sva)