Jeffrey T. Leek
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/sva |
| git_branch: RELEASE_3_15 |
| git_last_commit: 45ab2c1 |
| git_last_commit_date: 2022-04-26 11:09:24 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:23:49 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the sva package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sva.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1960/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sva 3.44.0 (landing page) Jeffrey T. Leek
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: sva |
| Version: 3.44.0 |
| Command: rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sva_3.44.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R sva.buildbin-libdir |
| StartedAt: 2022-10-19 11:17:16 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 11:18:00 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 44.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: sva_3.44.0.tgz |
| PackageFileSize: 507.8 KiB |
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### Running command:
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### rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sva_3.44.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R sva.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=sva.buildbin-libdir sva_3.44.0.tar.gz'
>>>>>>>
* installing *source* package ‘sva’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sva.c -o sva.o
sva.c:29:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
NULL
^~~~
{ }
/Library/Developer/CommandLineTools/usr/lib/clang/11.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
# define NULL ((void*)0)
^~~~~~~~~~
1 warning generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sva.so sva.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/sva.buildbin-libdir/00LOCK-sva/00new/sva/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sva)
>>>>>>>
>>>>>>> FIXING LINKS FOR sva.buildbin-libdir/sva/libs/sva.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "sva.buildbin-libdir/sva/libs/sva.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "sva.buildbin-libdir/sva/libs/sva.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "sva.buildbin-libdir/sva/libs/sva.so"