Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:49 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the inveRsion package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/inveRsion.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 951/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
inveRsion 1.43.0 (landing page) Alejandro Caceres
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
Package: inveRsion |
Version: 1.43.0 |
Command: rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=inveRsion.buildbin-libdir inveRsion_1.43.0.tar.gz |
StartedAt: 2022-03-17 21:15:59 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 21:17:24 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 85.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: inveRsion_1.43.0.zip |
PackageFileSize: 603.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf inveRsion.buildbin-libdir && mkdir inveRsion.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=inveRsion.buildbin-libdir inveRsion_1.43.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'inveRsion' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c init_inveRsion.c -o init_inveRsion.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c inversionModel.c -o inversionModel.o inversionModel.c: In function 'blockAndLev': inversionModel.c:185:31: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] if(dat[(*nr)*(c1)+row]==levelleft[level] & dat[(*nr)*(c2)+row]==levelright[level]) ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ inversionModel.c: In function 'inversionModel': inversionModel.c:360:15: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] while(steps<*maxSteps & tol>mintol) ~~~~~^~~~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c writeGenoDat.c -o writeGenoDat.o writeGenoDat.c: In function 'writeGenoDat': writeGenoDat.c:34:16: warning: 'dat' may be used uninitialized in this function [-Wmaybe-uninitialized] int i,j,l,k,dat,nomiss[*numlevcaco],sum[*numlevcaco]; ^~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o inveRsion.dll tmp.def init_inveRsion.o inversionModel.o writeGenoDat.o -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/inveRsion.buildbin-libdir/00LOCK-inveRsion/00new/inveRsion/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'inveRsion' finding HTML links ... done GenoDat-class html GenoDatROI-class html HaploCode-class html ac html accBic html accuracy-class html codeHaplo html gDat html getClassif-methods html getInv-methods html getROIs-methods html hapCode html invList html inveRsion-internal html inveRsion-package html inversion-class html inversionList-class html listInv-methods html scan-class html scanInv html scanRes html setUpGenoDatFile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'inveRsion' as inveRsion_1.43.0.zip * DONE (inveRsion)