Mauro Castro
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/RedeR |
| git_branch: master |
| git_last_commit: a886609 |
| git_last_commit_date: 2022-03-10 16:05:53 -0400 (Thu, 10 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:27 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RedeR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1577/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RedeR 1.99.1 (landing page) Mauro Castro
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RedeR |
| Version: 1.99.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RedeR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings RedeR_1.99.1.tar.gz |
| StartedAt: 2022-03-17 20:02:27 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:03:17 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 50.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RedeR.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RedeR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings RedeR_1.99.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/RedeR.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RedeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RedeR' version '1.99.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RedeR' can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
data 3.3Mb
java 1.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.15-bioc/meat/RedeR.Rcheck/00check.log'
for details.
RedeR.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL RedeR
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'RedeR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RedeR'
finding HTML links ... done
RedPort-class html
RedPort html
RedeR-package html
RedeR.data html
addEdgeBetweenContainers html
addEdges html
addGraph html
addLegend html
addNodes html
addSeries html
addSubgraph html
addSubgraph.list html
att html
calld html
cea html
deSelectEdges html
deSelectGraph html
deSelectNodes html
deleteEdges html
deleteNodes html
deleteSelectedEdges html
deleteSelectedNodes html
duplicateGraph html
exitd html
getContainerComponets html
getEdgeIDs html
getEdges html
getGraph html
getNodeIDs html
getNodes html
getSourceEdgeIDs html
getTargetEdgeIDs html
gtoy.rm html
isRelaxActive html
mergeNodes html
mergeOutEdges html
nestNodes html
nesthc html
ping html
rederpost html
relax html
resetd html
selectAllEdges html
selectAllNodes html
selectEdges html
selectGraph html
selectNodes html
setArrowDirection html
subg html
updateContainerSize html
updateCoordXY html
updateGraph html
version html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'Path2PPI' is missing or broken
done
RedeR.Rcheck/RedeR-Ex.timings
| name | user | system | elapsed | |
| RedPort-class | 0 | 0 | 0 | |
| RedPort | 0.04 | 0.00 | 0.05 | |
| RedeR.data | 0.33 | 0.00 | 0.32 | |
| addEdgeBetweenContainers | 0.02 | 0.00 | 0.02 | |
| addEdges | 0 | 0 | 0 | |
| addGraph | 0.00 | 0.01 | 0.01 | |
| addLegend | 0.02 | 0.00 | 0.02 | |
| addNodes | 0.01 | 0.00 | 0.01 | |
| addSeries | 0 | 0 | 0 | |
| addSubgraph | 0 | 0 | 0 | |
| addSubgraph.list | 0 | 0 | 0 | |
| att | 0.07 | 0.00 | 0.06 | |
| calld | 0 | 0 | 0 | |
| cea | 0.01 | 0.00 | 0.02 | |
| deSelectEdges | 0.02 | 0.00 | 0.02 | |
| deSelectGraph | 0.01 | 0.00 | 0.01 | |
| deSelectNodes | 0.02 | 0.00 | 0.02 | |
| deleteEdges | 0.06 | 0.00 | 0.06 | |
| deleteNodes | 0 | 0 | 0 | |
| deleteSelectedEdges | 0.02 | 0.00 | 0.02 | |
| deleteSelectedNodes | 0.01 | 0.00 | 0.01 | |
| duplicateGraph | 0 | 0 | 0 | |
| exitd | 0 | 0 | 0 | |
| getContainerComponets | 0.00 | 0.02 | 0.02 | |
| getEdgeIDs | 0.02 | 0.00 | 0.01 | |
| getEdges | 0.01 | 0.00 | 0.02 | |
| getGraph | 0.02 | 0.00 | 0.01 | |
| getNodeIDs | 0 | 0 | 0 | |
| getNodes | 0.00 | 0.01 | 0.02 | |
| getSourceEdgeIDs | 0 | 0 | 0 | |
| getTargetEdgeIDs | 0.01 | 0.00 | 0.01 | |
| gtoy.rm | 0 | 0 | 0 | |
| isRelaxActive | 0 | 0 | 0 | |
| mergeNodes | 0.02 | 0.00 | 0.02 | |
| mergeOutEdges | 0 | 0 | 0 | |
| nestNodes | 0.02 | 0.00 | 0.02 | |
| nesthc | 0.90 | 0.02 | 0.92 | |
| ping | 0 | 0 | 0 | |
| relax | 0.02 | 0.00 | 0.01 | |
| resetd | 0 | 0 | 0 | |
| selectAllEdges | 0.01 | 0.00 | 0.02 | |
| selectAllNodes | 0.02 | 0.00 | 0.01 | |
| selectEdges | 0 | 0 | 0 | |
| selectGraph | 0.00 | 0.01 | 0.02 | |
| selectNodes | 0.01 | 0.00 | 0.02 | |
| setArrowDirection | 0 | 0 | 0 | |
| subg | 0.05 | 0.00 | 0.04 | |
| updateContainerSize | 0 | 0 | 0 | |
| updateCoordXY | 0.02 | 0.00 | 0.02 | |
| updateGraph | 0.01 | 0.00 | 0.01 | |
| version | 0 | 0 | 0 | |