Mauro Castro
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/RedeR |
| git_branch: RELEASE_3_15 |
| git_last_commit: 9e1b175 |
| git_last_commit_date: 2022-08-26 07:55:09 -0400 (Fri, 26 Aug 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:20:45 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RedeR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1613/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RedeR 2.0.1 (landing page) Mauro Castro
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RedeR |
| Version: 2.0.1 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings RedeR_2.0.1.tar.gz |
| StartedAt: 2022-10-18 21:24:37 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 21:25:14 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 36.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RedeR.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings RedeR_2.0.1.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/RedeR.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘2.0.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 3.3Mb
java 1.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.15-bioc/meat/RedeR.Rcheck/00check.log’
for details.
RedeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL RedeR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘RedeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings
| name | user | system | elapsed | |
| RedPort-class | 0.006 | 0.000 | 0.006 | |
| RedPort | 0.002 | 0.000 | 0.002 | |
| RedeR.data | 0.412 | 0.008 | 0.420 | |
| addEdgeBetweenContainers | 0.015 | 0.000 | 0.015 | |
| addEdges | 0.012 | 0.000 | 0.012 | |
| addGraph | 0.01 | 0.00 | 0.01 | |
| addLegend | 0.104 | 0.004 | 0.108 | |
| addNodes | 0.011 | 0.000 | 0.011 | |
| addSeries | 0 | 0 | 0 | |
| addSubgraph | 0 | 0 | 0 | |
| addSubgraph.list | 0.001 | 0.000 | 0.001 | |
| att | 0.043 | 0.000 | 0.043 | |
| calld | 0.002 | 0.000 | 0.002 | |
| cea | 0.017 | 0.000 | 0.017 | |
| deSelectEdges | 0.014 | 0.000 | 0.014 | |
| deSelectGraph | 0.01 | 0.00 | 0.01 | |
| deSelectNodes | 0.009 | 0.000 | 0.009 | |
| deleteEdges | 0.008 | 0.003 | 0.010 | |
| deleteNodes | 0.008 | 0.003 | 0.010 | |
| deleteSelectedEdges | 0.007 | 0.003 | 0.010 | |
| deleteSelectedNodes | 0.01 | 0.00 | 0.01 | |
| duplicateGraph | 0.001 | 0.000 | 0.000 | |
| exitd | 0.000 | 0.001 | 0.002 | |
| getContainerComponets | 0.011 | 0.002 | 0.012 | |
| getEdgeIDs | 0.011 | 0.000 | 0.011 | |
| getEdges | 0.006 | 0.004 | 0.010 | |
| getGraph | 0.006 | 0.004 | 0.010 | |
| getNodeIDs | 0.011 | 0.000 | 0.011 | |
| getNodes | 0.011 | 0.000 | 0.012 | |
| getSourceEdgeIDs | 0.007 | 0.004 | 0.011 | |
| getTargetEdgeIDs | 0.008 | 0.003 | 0.011 | |
| gtoy.rm | 0.000 | 0.001 | 0.000 | |
| isRelaxActive | 0.000 | 0.002 | 0.002 | |
| mergeNodes | 0.009 | 0.004 | 0.012 | |
| mergeOutEdges | 0.013 | 0.000 | 0.012 | |
| nestNodes | 0.012 | 0.000 | 0.012 | |
| nesthc | 1.009 | 0.116 | 1.125 | |
| ping | 0.000 | 0.002 | 0.002 | |
| relax | 0.008 | 0.002 | 0.010 | |
| resetd | 0.002 | 0.000 | 0.002 | |
| selectAllEdges | 0.01 | 0.00 | 0.01 | |
| selectAllNodes | 0.007 | 0.004 | 0.010 | |
| selectEdges | 0.010 | 0.000 | 0.011 | |
| selectGraph | 0.01 | 0.00 | 0.01 | |
| selectNodes | 0.006 | 0.003 | 0.009 | |
| setArrowDirection | 0.01 | 0.00 | 0.01 | |
| subg | 0.038 | 0.004 | 0.042 | |
| updateContainerSize | 0.01 | 0.00 | 0.01 | |
| updateCoordXY | 0.01 | 0.00 | 0.01 | |
| updateGraph | 0.007 | 0.002 | 0.009 | |
| version | 0.001 | 0.000 | 0.001 | |