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This page was generated on 2022-03-18 11:08:15 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for PathoStat on riesling1


To the developers/maintainers of the PathoStat package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PathoStat.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1385/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PathoStat 1.21.0  (landing page)
Solaiappan Manimaran
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/PathoStat
git_branch: master
git_last_commit: f8d3cce
git_last_commit_date: 2021-10-26 12:30:40 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PathoStat
Version: 1.21.0
Command: rm -rf PathoStat.buildbin-libdir && mkdir PathoStat.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=PathoStat.buildbin-libdir PathoStat_1.21.0.tar.gz
StartedAt: 2022-03-17 21:27:23 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:28:31 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 68.5 seconds
RetCode: 0
Status:   OK  
PackageFile: PathoStat_1.21.0.zip
PackageFileSize: 1.094 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf PathoStat.buildbin-libdir && mkdir PathoStat.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=PathoStat.buildbin-libdir PathoStat_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'PathoStat' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PathoStat'
    finding HTML links ... done
    Bootstrap_LOOCV_LR_AUC                  html  
    Chisq_Test_Pam                          html  
    Fisher_Test_Pam                         html  
    GET_PAM                                 html  
    LOOAUC_simple_multiple_noplot_one_df    html  
    LOOAUC_simple_multiple_one_df           html  
    PathoStat-class                         html  
    TranslateIdToTaxLevel                   html  
    Wilcox_Test_df                          html  
    findRAfromCount                         html  
    findTaxonMat                            html  
    findTaxonomy                            html  
    findTaxonomy300                         html  
    formatTaxTable                          html  
    getShinyInput                           html  
    getShinyInputCombat                     html  
    getShinyInputOrig                       html  
    getSignatureFromMultipleGlmnet          html  
    grepTid                                 html  
    loadPathoscopeReports                   html  
    loadPstat                               html  
    log2CPM                                 html  
    percent                                 html  
    phyloseq_to_edgeR                       html  
    plotPCAPlotly                           html  
    plotPCoAPlotly                          html  
    pstat_data                              html  
    readPathoscopeData                      html  
    runPathoStat                            html  
    savePstat                               html  
    setShinyInput                           html  
    setShinyInputCombat                     html  
    setShinyInputOrig                       html  
    summarizeTable                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'PathoStat' as PathoStat_1.21.0.zip
* DONE (PathoStat)