Ali Oghabian
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/IntEREst |
| git_branch: master |
| git_last_commit: 7cbf6bc |
| git_last_commit_date: 2022-02-01 06:53:11 -0400 (Tue, 01 Feb 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:49 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the IntEREst package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IntEREst.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 948/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IntEREst 1.19.2 (landing page) Ali Oghabian
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: IntEREst |
| Version: 1.19.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IntEREst.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings IntEREst_1.19.2.tar.gz |
| StartedAt: 2022-03-17 19:23:07 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:27:21 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 254.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IntEREst.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IntEREst.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings IntEREst_1.19.2.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/IntEREst.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IntEREst/DESCRIPTION' ... OK
* this is package 'IntEREst' version '1.19.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IntEREst' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DEXSeqIntEREst 14.86 0.06 14.92
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
IntEREst.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL IntEREst
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'IntEREst' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'IntEREst'
finding HTML links ... done
DEXSeqIntEREst html
IntEREst-package html
addAnnotation html
annotateU12 html
applyOverlap html
attributes html
boxplot-method html
buildSsTypePwms html
counts-method html
deseqInterest html
exactTestInterest html
getRepeatTable html
glmInterest html
interest html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-IntEREst/00new/IntEREst/help/interest.html
interest.sequential html
interestResult html
interestResultIntEx html
intexIndex html
lfc html
mdsChr22ExObj html
mdsChr22IntSpObj html
mdsChr22Obj html
mergeInterestResult html
plot-method html
psi html
pwmU12db html
qlfInterest html
readInterestResults html
referencePrepare html
subInterestResult html
treatInterest html
u12 html
u12Boxplot html
u12BoxplotNb html
u12DensityPlot html
u12Index html
u12NbIndex html
unionRefTr html
updateRowDataCol html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IntEREst)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'odseq' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'ORFik' is missing or broken
done
IntEREst.Rcheck/IntEREst-Ex.timings
| name | user | system | elapsed | |
| DEXSeqIntEREst | 14.86 | 0.06 | 14.92 | |
| addAnnotation | 0.02 | 0.00 | 0.02 | |
| annotateU12 | 1.72 | 0.14 | 1.85 | |
| applyOverlap | 0.13 | 0.00 | 0.13 | |
| attributes | 0.01 | 0.00 | 0.02 | |
| boxplot-method | 0.03 | 0.00 | 0.03 | |
| buildSsTypePwms | 0 | 0 | 0 | |
| counts-method | 0.03 | 0.00 | 0.03 | |
| deseqInterest | 3.74 | 0.19 | 3.92 | |
| exactTestInterest | 0.08 | 0.00 | 0.08 | |
| getRepeatTable | 0 | 0 | 0 | |
| glmInterest | 0.14 | 0.00 | 0.14 | |
| interest | 1.28 | 0.00 | 1.30 | |
| interest.sequential | 1.15 | 0.00 | 1.15 | |
| interestResult | 0.02 | 0.00 | 0.02 | |
| interestResultIntEx | 0.11 | 0.00 | 0.11 | |
| intexIndex | 0 | 0 | 0 | |
| lfc | 0.17 | 0.02 | 0.18 | |
| mergeInterestResult | 0.05 | 0.00 | 0.05 | |
| plot-method | 0.2 | 0.0 | 0.2 | |
| psi | 0.49 | 0.00 | 0.49 | |
| qlfInterest | 0.17 | 0.00 | 0.17 | |
| readInterestResults | 0.01 | 0.00 | 0.03 | |
| referencePrepare | 0.80 | 0.00 | 0.79 | |
| subInterestResult | 0.02 | 0.00 | 0.02 | |
| treatInterest | 0.17 | 0.00 | 0.17 | |
| u12Boxplot | 0.03 | 0.00 | 0.03 | |
| u12BoxplotNb | 0.05 | 0.00 | 0.05 | |
| u12DensityPlot | 0.18 | 0.00 | 0.19 | |
| u12Index | 0.02 | 0.00 | 0.01 | |
| u12NbIndex | 0.01 | 0.00 | 0.02 | |
| unionRefTr | 0 | 0 | 0 | |
| updateRowDataCol | 0.04 | 0.00 | 0.04 | |