| Back to Workflows build report for BioC 3.14 |
This page was generated on 2022-04-11 21:00:09 -0400 (Mon, 11 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4323 |
| riesling1 | Windows Server 2019 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4108 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4136 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SingscoreAMLMutations package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 27/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| SingscoreAMLMutations 1.10.0 (landing page) Dharmesh D. Bhuva
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | ERROR | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | |||||||||
| Package: SingscoreAMLMutations |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations |
| StartedAt: 2022-04-11 15:04:30 -0400 (Mon, 11 Apr 2022) |
| EndedAt: 2022-04-11 15:05:29 -0400 (Mon, 11 Apr 2022) |
| EllapsedTime: 59.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations ### ############################################################################## ############################################################################## * checking for file ‘SingscoreAMLMutations/DESCRIPTION’ ... OK * preparing ‘SingscoreAMLMutations’: * checking DESCRIPTION meta-information ...It is recommended to use ‘given’ instead of ‘middle’. It is recommended to use ‘given’ instead of ‘middle’. OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘workflow_transcriptional_mut_sig.Rmd’ using rmarkdown -------------------------------------- o GDCquery: Searching in GDC database -------------------------------------- Genome of reference: hg38 -------------------------------------------- oo Accessing GDC. This might take a while... -------------------------------------------- ooo Project: TCGA-LAML -------------------- oo Filtering results -------------------- ooo By data.type Quitting from lines 162-176 (workflow_transcriptional_mut_sig.Rmd) Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics: Please set a valid workflow.type argument from the list below: => STAR - Counts --- failed re-building ‘workflow_transcriptional_mut_sig.Rmd’ --- re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ using rmarkdown -------------------------------------- o GDCquery: Searching in GDC database -------------------------------------- Genome of reference: hg38 -------------------------------------------- oo Accessing GDC. This might take a while... -------------------------------------------- ooo Project: TCGA-LAML -------------------- oo Filtering results -------------------- ooo By data.type Quitting from lines 159-173 (workflow_transcriptional_mut_sig_chinese.Rmd) Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics: Please set a valid workflow.type argument from the list below: => STAR - Counts --- failed re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ SUMMARY: processing the following files failed: ‘workflow_transcriptional_mut_sig.Rmd’ ‘workflow_transcriptional_mut_sig_chinese.Rmd’ Error: Vignette re-building failed. Execution halted