| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:36 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the RadioGx package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RadioGx.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1519/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RadioGx 1.4.0 (landing page) Benjamin Haibe-Kains
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: RadioGx |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RadioGx_1.4.0.tar.gz |
| StartedAt: 2022-04-12 17:16:59 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 17:22:35 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 335.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RadioGx.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RadioGx_1.4.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/RadioGx.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RadioGx/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RadioGx’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RadioGx’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 14 marked UTF-8 strings
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
RadioSet-class 12.099 0.47 12.579
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.14-bioc/meat/RadioGx.Rcheck/00check.log’
for details.
RadioGx.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RadioGx ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘RadioGx’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RadioGx)
RadioGx.Rcheck/RadioGx-Ex.timings
| name | user | system | elapsed | |
| RadioSet-class | 12.099 | 0.470 | 12.579 | |
| availableRSets | 0.001 | 0.000 | 0.001 | |
| checkRSetStructure | 0.566 | 0.008 | 0.574 | |
| computeAUC | 0.004 | 0.001 | 0.005 | |
| computeD10 | 0.001 | 0.001 | 0.000 | |
| computeSF2 | 0 | 0 | 0 | |
| dim-RadioSet-method | 0.372 | 0.003 | 0.376 | |
| doseResponseCurve | 0.116 | 0.003 | 0.119 | |
| downloadRSet | 0.000 | 0.000 | 0.001 | |
| linearQuadraticModel | 0.007 | 0.001 | 0.007 | |
| mDataNames-RadioSet-method | 0.000 | 0.001 | 0.001 | |
| plotCurve | 0.028 | 0.001 | 0.029 | |
| radSensitivitySig | 1.074 | 0.035 | 1.112 | |
| radiationInfo-set | 0 | 0 | 0 | |
| radiationInfo | 0.001 | 0.000 | 0.001 | |
| radiationTypes-set | 0.008 | 0.000 | 0.008 | |
| radiationTypes | 0.488 | 0.006 | 0.494 | |
| show-RadioSet-method | 1.044 | 0.009 | 1.055 | |
| show-RadioSig-method | 0.976 | 0.028 | 1.013 | |
| showSigAnnot-RadioSig-method | 0.964 | 0.037 | 1.002 | |
| subsetTo-RadioSet-method | 0.235 | 0.013 | 0.247 | |
| summarizeMolecularProfiles-RadioSet-method | 0.754 | 0.009 | 0.764 | |
| summarizeSensitivityProfiles-RadioSet-method | 0.417 | 0.010 | 0.429 | |