| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:24 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CrispRVariants package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CrispRVariants.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 418/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CrispRVariants 1.22.0 (landing page) Helen Lindsay
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: CrispRVariants |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CrispRVariants_1.22.0.tar.gz && rm -rf CrispRVariants.buildbin-libdir && mkdir CrispRVariants.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CrispRVariants.buildbin-libdir CrispRVariants_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CrispRVariants_1.22.0.zip && rm CrispRVariants_1.22.0.tar.gz CrispRVariants_1.22.0.zip |
| StartedAt: 2022-04-12 05:41:19 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:43:26 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 127.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CrispRVariants_1.22.0.tar.gz && rm -rf CrispRVariants.buildbin-libdir && mkdir CrispRVariants.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CrispRVariants.buildbin-libdir CrispRVariants_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CrispRVariants_1.22.0.zip && rm CrispRVariants_1.22.0.tar.gz CrispRVariants_1.22.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
6 1394k 6 86281 0 0 317k 0 0:00:04 --:--:-- 0:00:04 317k
77 1394k 77 1079k 0 0 854k 0 0:00:01 0:00:01 --:--:-- 854k
100 1394k 100 1394k 0 0 960k 0 0:00:01 0:00:01 --:--:-- 961k
install for i386
* installing *source* package 'CrispRVariants' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CrispRVariants'
finding HTML links ... done
CrisprRun-class html
CrisprSet-class html
abifToFastq html
addClipped html
addCodonFrame html
alleleLabelsHelpers html
alleles html
alns html
annotateGenePlot html
arrangePlots html
barplotAlleleFreqs html
collapsePairs html
consensusSeqs html
dispatchDots html
excludeFromBam html
explodeCigarOpCombs html
findChimeras html
findSNVs html
getAxisCoords html
getChimeras html
getInsertionsTable html
gol_clutch1 html
indelCounts html
indelLabels html
intersperse html
makeAlignmentTilePlot html
mergeChimeras html
mergeCrisprSets html
mismatchLabels html
mutationEfficiency html
narrowAlignments html
plotAlignments html
plotChimeras html
plotFreqHeatmap html
plotVariants html
rcAlns html
readTargetBam html
readsByPCRPrimer html
readsToTarget html
refFromAlns html
reverseCigar html
rmMultiPCRChimera html
selectAlnRegionsHelpers html
selectOps html
seqsToAln html
setDNATileColours html
setMismatchTileColours html
transformAlnsToLong html
variantCounts html
writeFastq html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CrispRVariants' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CrispRVariants' as CrispRVariants_1.22.0.zip
* DONE (CrispRVariants)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CrispRVariants' successfully unpacked and MD5 sums checked