| Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:43 -0400 (Sat, 16 Oct 2021).
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To the developers/maintainers of the signatureSearchData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 349/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| signatureSearchData 1.6.0 (landing page) Yuzhu Duan
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: signatureSearchData |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings signatureSearchData_1.6.0.tar.gz |
| StartedAt: 2021-10-16 14:01:20 -0400 (Sat, 16 Oct 2021) |
| EndedAt: 2021-10-16 14:05:24 -0400 (Sat, 16 Oct 2021) |
| EllapsedTime: 244.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: signatureSearchData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings signatureSearchData_1.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/signatureSearchData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘signatureSearchData/DESCRIPTION’ ... OK
* this is package ‘signatureSearchData’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.git_fetch_output.txt
.git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘signatureSearchData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ES_NULL 4.691 0.243 6.252
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.13-data-experiment/meat/signatureSearchData.Rcheck/00check.log’
for details.
signatureSearchData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL signatureSearchData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘signatureSearchData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (signatureSearchData)
signatureSearchData.Rcheck/signatureSearchData-Ex.timings
| name | user | system | elapsed | |
| ES_NULL | 4.691 | 0.243 | 6.252 | |
| GO_DATA | 2.453 | 0.036 | 3.168 | |
| GO_DATA_drug | 1.887 | 0.024 | 2.481 | |
| cmap | 0.058 | 0.000 | 0.057 | |
| cmap_expr | 0.056 | 0.000 | 0.056 | |
| cmap_rank | 0.059 | 0.000 | 0.059 | |
| combineNormRes | 0 | 0 | 0 | |
| combineResults | 0.000 | 0.001 | 0.000 | |
| dtlink_db_clue_sti | 1.773 | 0.034 | 2.170 | |
| getCmapCEL | 0.001 | 0.000 | 0.000 | |
| goAnno | 1.260 | 0.008 | 1.644 | |
| goAnno_drug | 1.336 | 0.024 | 1.778 | |
| inst_filter | 0.007 | 0.000 | 0.006 | |
| lincs | 0.066 | 0.000 | 0.065 | |
| lincs_expr | 0.065 | 0.000 | 0.065 | |
| meanExpr | 0.053 | 0.000 | 0.071 | |
| meanExpr2h5 | 0.388 | 0.039 | 0.450 | |
| normalizeCel | 0 | 0 | 0 | |
| probe2gene | 0.002 | 0.000 | 0.002 | |
| runLimma | 1.817 | 0.000 | 1.817 | |
| sampleList | 1.711 | 0.000 | 1.710 | |
| sig_filter | 0.007 | 0.000 | 0.007 | |
| signatureSearchData | 1.861 | 0.023 | 2.470 | |
| taurefList | 1.389 | 0.016 | 1.899 | |