| Back to Build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-10-16 15:58:39 -0400 (Sat, 16 Oct 2021).
|
To the developers/maintainers of the ChIPXpressData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 64/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ChIPXpressData 1.30.0 (landing page) George Wu
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: ChIPXpressData |
| Version: 1.30.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ChIPXpressData_1.30.0.tar.gz |
| StartedAt: 2021-10-16 12:57:14 -0400 (Sat, 16 Oct 2021) |
| EndedAt: 2021-10-16 13:00:52 -0400 (Sat, 16 Oct 2021) |
| EllapsedTime: 217.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ChIPXpressData.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ChIPXpressData_1.30.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/ChIPXpressData.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPXpressData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPXpressData’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
.git_fetch_output.txt
.git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPXpressData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 4306.8Mb
sub-directories of 1Mb or more:
extdata 4305.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
GPL1261mean.rda 215Kb 180Kb xz
GPL1261var.rda 216Kb 189Kb xz
GPL570mean.rda 198Kb 159Kb xz
GPL570var.rda 209Kb 181Kb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/home/biocbuild/bbs-3.13-data-experiment/meat/ChIPXpressData.Rcheck/00check.log’
for details.
ChIPXpressData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL ChIPXpressData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘ChIPXpressData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChIPXpressData)
ChIPXpressData.Rcheck/ChIPXpressData-Ex.timings
| name | user | system | elapsed | |
| DB_GPL1261.bigmemory | 0.071 | 0.040 | 0.122 | |
| DB_GPL570.bigmemory | 0.196 | 0.084 | 0.290 | |
| GPL1261mean | 0.025 | 0.000 | 0.024 | |
| GPL1261var | 0.012 | 0.000 | 0.012 | |
| GPL570mean | 0.014 | 0.000 | 0.014 | |
| GPL570var | 0.010 | 0.000 | 0.011 | |