| Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).
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To the developers/maintainers of the COPDSexualDimorphism.data package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 76/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| COPDSexualDimorphism.data 1.28.0 (landing page) J Fah Sathirapongsasuti
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: COPDSexualDimorphism.data |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings COPDSexualDimorphism.data_1.28.0.tar.gz |
| StartedAt: 2021-10-16 12:59:54 -0400 (Sat, 16 Oct 2021) |
| EndedAt: 2021-10-16 13:01:00 -0400 (Sat, 16 Oct 2021) |
| EllapsedTime: 66.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: COPDSexualDimorphism.data.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings COPDSexualDimorphism.data_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/COPDSexualDimorphism.data.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘COPDSexualDimorphism.data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘COPDSexualDimorphism.data’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.git_fetch_output.txt
.git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘COPDSexualDimorphism.data’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 34.4Mb
sub-directories of 1Mb or more:
data 34.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
lgrc.eqtl.rda 1.3Mb 653Kb xz
lgrc.expr.rda 11.0Mb 7.6Mb xz
lgrc.genes.rda 640Kb 367Kb xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
‘/home/biocbuild/bbs-3.13-data-experiment/meat/COPDSexualDimorphism.data.Rcheck/00check.log’
for details.
COPDSexualDimorphism.data.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL COPDSexualDimorphism.data ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘COPDSexualDimorphism.data’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COPDSexualDimorphism.data)
COPDSexualDimorphism.data.Rcheck/COPDSexualDimorphism.data-Ex.timings
| name | user | system | elapsed | |
| COPDSexualDimorphism.data-package | 0.285 | 0.008 | 0.293 | |
| lgrc.expr | 0.532 | 0.007 | 0.540 | |