Laurent Gatto
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/synapter |
| git_branch: RELEASE_3_13 |
| git_last_commit: 93006a2 |
| git_last_commit_date: 2021-05-19 11:52:59 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the synapter package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/synapter.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1883/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| synapter 2.16.0 (landing page) Laurent Gatto
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: synapter |
| Version: 2.16.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/synapter_2.16.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL synapter_2.16.0.zip && rm synapter_2.16.0.tar.gz synapter_2.16.0.zip |
| StartedAt: 2021-10-14 09:41:38 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:45:15 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 217.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/synapter_2.16.0.tar.gz && rm -rf synapter.buildbin-libdir && mkdir synapter.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synapter.buildbin-libdir synapter_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL synapter_2.16.0.zip && rm synapter_2.16.0.tar.gz synapter_2.16.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'synapter' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'synapter'
finding HTML links ... done
MasterFdrResults-class html
MasterPeptides-class html
Synapter html
finding level-2 HTML links ... done
createUniquePeptideDbRds html
defunct html
estimateMasterFdr html
inspectPeptideScores html
makeMaster html
plotCrossMatching html
requantify html
rescaleForTop3 html
synapter-package html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/synapter.buildbin-libdir/00LOCK-synapter/00new/synapter/help/synapter.html
synapterGuide html
synapterPlgsAgreement html
synapterTinyData html
synergise html
synergise2 html
** building package indices
** installing vignettes
'fragmentmatching.Rmd' using 'UTF-8'
'synapter.Rmd' using 'UTF-8'
'synapter2.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'synapter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synapter' as synapter_2.16.0.zip
* DONE (synapter)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'synapter' successfully unpacked and MD5 sums checked