Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2021-10-15 15:06:53 -0400 (Fri, 15 Oct 2021).

INSTALL results for sitadela on machv2

To the developers/maintainers of the sitadela package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sitadela.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1783/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sitadela 1.0.31  (landing page)
Panagiotis Moulos
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/sitadela
git_branch: RELEASE_3_13
git_last_commit: 4dcef7f
git_last_commit_date: 2021-10-13 12:19:09 -0400 (Wed, 13 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  ERROR    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  ERROR    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: sitadela
Version: 1.0.31
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL sitadela
StartedAt: 2021-10-14 09:57:04 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 09:57:20 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 15.7 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL sitadela
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘sitadela’ ...
** using staged installation
** R
Error in parse(outFile) : 
  /Users/biocbuild/bbs-3.13-bioc/meat/sitadela/R/query-utils.R:992:9: unexpected symbol
991:         host="genome-mysql.soe.ucsc.edu"
992:         user
             ^
ERROR: unable to collate and parse R files for package ‘sitadela’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/sitadela’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/sitadela’