| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the myvariant package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/myvariant.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1240/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| myvariant 1.22.0 (landing page) Adam Mark, Chunlei Wu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: myvariant |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/myvariant_1.22.0.tar.gz && rm -rf myvariant.buildbin-libdir && mkdir myvariant.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=myvariant.buildbin-libdir myvariant_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL myvariant_1.22.0.zip && rm myvariant_1.22.0.tar.gz myvariant_1.22.0.zip |
| StartedAt: 2021-10-14 10:30:19 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:31:20 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 61.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/myvariant_1.22.0.tar.gz && rm -rf myvariant.buildbin-libdir && mkdir myvariant.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=myvariant.buildbin-libdir myvariant_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL myvariant_1.22.0.zip && rm myvariant_1.22.0.tar.gz myvariant_1.22.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 17381 100 17381 0 0 135k 0 --:--:-- --:--:-- --:--:-- 135k
install for i386
* installing *source* package 'myvariant' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'myvariant'
finding HTML links ... done
MyVariant-class html
MyVariant html
formatHgvs html
finding level-2 HTML links ... done
formatSingleHgvs html
getVariant html
getVariants html
metadata html
myvariant-package html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/myvariant.buildbin-libdir/00LOCK-myvariant/00new/myvariant/help/myvariant.html
queryVariant html
queryVariants html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'myvariant' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'myvariant' as myvariant_1.22.0.zip
* DONE (myvariant)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'myvariant' successfully unpacked and MD5 sums checked